Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2779835	2779881	47	5 [3]	[2] 5	BW25113_RS26005	alpha‑amylase family glycosyl hydrolase

ATCTAAACTGTATAACAAATATTATTAATTCTTGTGGAGTTTACCCTCAAGGATTAAAAGACAGAGAAATTATATCAACTTTTCACGCAGAAAAAGTTATTAATGAT  >  NZ_CP009273/2779865‑2779971                  |                                                                                          atCTAAACTGTATAACAAATATTATTAATTCTTGTGGAGTTTACCCTCAAGGATTAAAAGACAGAGAAATTATATCAACTTTTCACGCAg                   >  2:790864/1‑90 (MQ=255)    tAAACTGTATAACAAATATTATTAATTCTTGTGGAGTTTACCCTCAAGGATTAAAAGACAGAGAAATTATATCAACTTTTCACGCAGaaa                >  1:1069630/1‑90 (MQ=255)                  aaTATTATTAATTCTTGTGGAGTTTACCCTCAAGGATTAAAAGACAGAGAAATTATATCAACTTTTCACGCAGAAAAAGtt           <  1:735262/81‑1 (MQ=255)                  aaTATTATTAATTCTTGTGGAGTTTACCCTCAAGGATTAAAAGACAGAGAAATTATATCAACTTTTCACGCAGAAAAAGtt           >  2:735262/1‑81 (MQ=255)                  aaTATTATTAATTCTTGTGGAGTTTACCCTCAAGGATTAAAAGACAGAGAAATTATATCAACTTTTCACGCAGAAAAAGTTATTAATGAt  >  2:146044/1‑90 (MQ=255)                  |                                                                                          ATCTAAACTGTATAACAAATATTATTAATTCTTGTGGAGTTTACCCTCAAGGATTAAAAGACAGAGAAATTATATCAACTTTTCACGCAGAAAAAGTTATTAATGAT  >  NZ_CP009273/2779865‑2779971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑