Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 1,257,298 | 0 | T | G | 58.3% | 2.1 / 12.6 | 12 | T12P (ACC→CCC) | prs | ribose‑phosphate diphosphokinase |
Reads supporting (aligned to +/- strand): ref base T (1/4); new base G (7/0); total (8/4) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.01e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.93e-03 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
TCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCCGGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGC > NZ_CP009273/1257222‑1257386 | tCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCCGGGGGGGCGTTACCAGCa > 1:289726/1‑90 (MQ=255) tCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAAAACGTTGTGCTAGTTTCGGGGGGGGGGTTCCAGCa > 2:87724/1‑90 (MQ=255) gACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCCGGGGGGGCGGTACCAGCAAAAAGCTTCa > 2:11500/1‑90 (MQ=255) aCCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCCGGGGGGGCGTTACCAGCAAAAAACTTCat > 1:338251/1‑90 (MQ=255) cAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCCGGGGGGGCGTTACCAGCAAAAAGCTTCATATCAg > 1:170839/1‑90 (MQ=255) gcgTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCCGGGGGGGGGGTACCAGCAAAAAACTTCATATCAGGCACg > 2:120903/1‑90 (MQ=255) acaggtgtACAGGCGGTTGGCAATACGTTGTGCTAGTTCCGGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGATCCTc < 2:371378/86‑1 (MQ=255) ggTTGGCAATACGTTGTGCTAGTTCCGGGGGGGCGTTACCAGCAAAAAACTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCAt > 1:238535/1‑90 (MQ=255) ttGGCAATACGTTGTGCTAGTTCCGGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATtg < 1:138440/90‑1 (MQ=255) ttGTGCTAGTTCCGGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAAt > 2:437616/1‑90 (MQ=255) ggTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACtgtg < 1:398661/90‑1 (MQ=255) gTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGc < 1:432190/90‑1 (MQ=255) | TCGCTAAAGCGACCTACAGCGGCGTCGCCGAGTGAAGTGTACAGGCGGTTGGCAATACGTTGTGCTAGTTCCGGGGTGGCGTTACCAGCAAAAAGCTTCATATCAGGCACGAGAAGAACCTCAGGCATGCGTCCATTGGTGGAAAGAATCTGCCGAAAACTGTGC > NZ_CP009273/1257222‑1257386 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |