Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 4,368,619 | 0 | A | C | 64.3% | 2.8 / 12.3 | 14 | V48G (GTA→GGA) | ampC | BlaEC family class C beta‑lactamase |
Reads supporting (aligned to +/- strand): ref base A (5/0); new base C (0/9); total (5/9) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.00e-04 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.61e-03 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
ACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCC‑TGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAG > NZ_CP009273/4368539‑4368700 | acGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCC‑TGATAAATTaccgccaccg > 2:404086/1‑90 (MQ=255) gtgACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCC‑TGATAAATTACCGCCACCGCCATACCCggg > 1:420051/1‑90 (MQ=255) ggggCTTTTTTTGGGGGATGCCCGCATAGCCCCGGGAAAAG‑AAAAAGGTTTTCCCGTAAAAATTTCCCGCCACCGCCATACCCGGGATCt < 1:418908/89‑1 (MQ=255) aTGCCCGCATCCCCCAAGGAAAAGTAATAAGTTTTCCCC‑TAAAAAATTCCCCCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGc < 1:788/90‑1 (MQ=255) aTGCCCGCATCCCCCAAGGAAAAAAAAAAAGTTTTCCCC‑TGAAAAATCCCCCCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGc < 1:254385/90‑1 (MQ=255) aTGCCCGCATACCCCCAGGAAAAGTAATAAGTTTTCCCC‑TAATAAATTCCCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGc < 1:153965/90‑1 (MQ=255) aTGCCCGCATA‑CCCCAAGAAAAAAAAAAAGGTTTTCCCTTAAAAAATCCCCCCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGc < 2:108390/90‑1 (MQ=255) gcccGCAAACCCCAAGAAAAAGAAATAAGTTTTCCCC‑TAAAAAATTCCCCCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCgg < 2:158368/88‑1 (MQ=255) aaGGAAAAGAAATAAGTTTTCCCC‑TAAAAAATTCCCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGa < 1:26485/89‑1 (MQ=255) aaaGTAAAAAGTTTTCCCC‑TAATAAATTCCCCCCCCCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGcac < 1:14174/90‑1 (MQ=255) aaGTAATAAGGTTTACCC‑TGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGcaca > 2:239286/1‑90 (MQ=255) ttcccc‑TAAAAAATTCCCGCCCCCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGAtt < 1:373665/87‑1 (MQ=255) ttACCC‑TGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGAtt > 1:12480/1‑90 (MQ=255) ttACCC‑TGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGAtt > 1:493817/1‑90 (MQ=255) gATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAg > 1:152308/1‑90 (MQ=255) | ACGTTTGCTGTGTGACGGGCTGCTTTTTGGCGATGTCCGCATAGCCCCAGGTAAAGTAATAAGGTTTACCC‑TGATAAATTACCGCCACCGCCATACCCGGGATCTTTTGTTGCTCTATAAGCGGGGTAATTGTGCGATGCACAATATCGTTGATTTGTTGAG > NZ_CP009273/4368539‑4368700 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |