| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 937,169 | 0 | T | G | 58.8% | 1.2 / 18.8 | 17 | V252G (GTG→GGG) | dmsA | dimethylsulfoxide reductase subunit A |
| Reads supporting (aligned to +/- strand): ref base T (0/7); new base G (10/0); total (10/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.14e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.65e-04 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTAT > NZ_CP009273/937081‑937236 | ggCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTg < 1:331113/90‑1 (MQ=255) aaCAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACt < 2:80965/90‑1 (MQ=255) aGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTAc < 2:631813/90‑1 (MQ=255) aGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTACTATCTTGAACAAGCACCCCCGAAAACTAAAGc > 2:355499/1‑90 (MQ=255) aGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGGGGGGGGGGTTTCTATTTTTAAAAAGCACGCCAGAAAAATAATGc > 1:312128/1‑90 (MQ=255) gCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTACTATCTTTAACAAGGACGCCAGAAATCTAATGcccc > 1:681400/1‑89 (MQ=255) tGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCa < 2:554261/90‑1 (MQ=255) tttGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTTCTATCTTTAACAGGCACGCCAGAAAACTAATGCCCCCATg > 2:243181/1‑90 (MQ=255) ttGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGGGGGGGGGATTTTTATCTTTTAAAAGCACGCCAGAAAACTAATGCCCCCATGa > 1:687634/1‑90 (MQ=255) aaCCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTTCTATCTTTAACAGGCACGCCAGAAAACTAATGCCCCCATGatcatcatc > 2:410899/1‑90 (MQ=255) cTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGATc < 2:544027/90‑1 (MQ=255) cTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGATc < 2:611428/90‑1 (MQ=255) tGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTTCTATCTTTAACAGGCACGCCAAAAAACTAAAGCCCCCATGATCATCCCCGATcc > 2:307150/1‑90 (MQ=255) tGGCGAAACGCGAATGAGTGGCGGGGGGGGGGCTTTCTATCTTTAACAGGCACCCCCGAAAACTAAATCCCGCCGGATCATCATCTATcc > 1:259802/1‑90 (MQ=255) aCGCGAATGAGTGGCGGTGGGGGGACTTACTATCTTGAACAGGCACGCCAGAAAACTAATGCCCGCCTGATCATCATCGATCCCCGCtat > 2:542234/1‑90 (MQ=255) gAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAAt < 1:35517/52‑1 (MQ=255) gAGTGGCGGTGGGGGGACTTACTATCTTGAACAGGCACGCCAGAAATCTAAt > 2:35517/1‑52 (MQ=255) | GGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTAT > NZ_CP009273/937081‑937236 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |