Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 1,504,652 | 0 | C | A | 55.6% | 4.1 / 13.1 | 9 | S131R (AGC→AGA) | ydcR | PLP‑dependent aminotransferase family protein |
Reads supporting (aligned to +/- strand): ref base C (4/0); new base A (0/5); total (4/5) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.94e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.17e-02 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GTTCCGTTTGCCTCGGCCTTTCCCGACCCGCGACTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCAAAACCGCCACAGCGATGAGCGTGATTGAAAACTTACCGCCAGGAAACGCAGAACTGCGTCAGGCTATTGCTCGTCGCTATGCCTTA > NZ_CP009273/1504575‑1504739 | gTTCCTTTTGCCCCGGCCTTCCCCGCCCCGCGACTTTCCCCCCTCCAACAACAAACCCGCTCGCTGGCGCAGGAAAGAAAAACCGCcaca < 2:705621/90‑1 (MQ=255) cTCGGCTTTCCCCGACCCGCGCTTTTCCCCCCCCCAACAACAAACCCGCTCGCGGGGGAAGGAAAGAAAAACCGCCACAGCGATGAGCGt < 2:642503/90‑1 (MQ=255) gcgACTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCAAAACCGCCACAGCGATGAGCGTGATTGAAAACTTACCGcc > 1:741376/1‑90 (MQ=255) ttcccccccCAAACAACAAACCCGCCCGCGGGCGCAGGAAAGAAAACCCGCCACAGCGATGAGCGTGATTGAAAACTTACCGCCAGGaaa < 2:54627/87‑1 (MQ=255) gctcgctGGCGCAGGTAAGCAAAACCGCCACAGCGATGAGCGTGATTGAAAACTTACCGCCAGGAAACGCAGAACTGCGTCAGGCTATTg > 1:587767/1‑90 (MQ=255) cgcgGGCGGAGGAAAAAAAAACCGCCACAGCGATGAGCGTGATTGAAAACTTACCGCCAGGAAACGCAGAACTGCGTCAGGCTATTGCtc < 2:236157/90‑1 (MQ=255) ggCGCAGGTAAGCAAAACCGCCACAGCGATGAGCGTGATTGAAAACTTACCGCCAGGAAACGCAGAACTGCGTCAGGCTATTGCtcgtcg > 2:654169/1‑90 (MQ=255) gcAGGAAAAAAAACCCGCCACAGCGATGAGCGTGATTGAAAACTTACCGCCAGGAAACGCAGAACTGCGTCAGGCTATTGCTCGTCGCTa < 2:587767/90‑1 (MQ=255) aGCAAAACCGCCACAGCGATGAGCGTGATTGAAAACTTACCGCCAGGAAACGCAGAACTGCGTCAGGCTATTGCTCGTCGCTATGCCTTa > 2:499579/1‑90 (MQ=255) | GTTCCGTTTGCCTCGGCCTTTCCCGACCCGCGACTTTTCCCCCTCCAACAACTAAACCGCTCGCTGGCGCAGGTAAGCAAAACCGCCACAGCGATGAGCGTGATTGAAAACTTACCGCCAGGAAACGCAGAACTGCGTCAGGCTATTGCTCGTCGCTATGCCTTA > NZ_CP009273/1504575‑1504739 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |