Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 3,090,826 | 0 | T | G | 55.6% | 15.6 / 26.7 | 27 | G67G (GGT→GGG) | hemW | radical SAM family heme chaperone HemW |
Reads supporting (aligned to +/- strand): ref base T (3/9); new base G (15/0); total (18/9) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.69e-05 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.28e-03 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
TGTTCAGCATCTGCTTAACGATCTGGACAACGATGTGGCTTACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCGGTGGTACGCCGAGCCTGCTTTCCGGCCCGGCGATGCAAACGCTGCTGGACGGCGTGCGTGCGCGTTTGCCGCTGGCAGCGGATGCAGAAATT > NZ_CP009273/3090742‑3090913 | tGTTCAGCATCTGCTTAACGATCTGGACAACGATGTGGCTTACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCGGTGGTACGcc < 2:498276/90‑1 (MQ=255) aGCATCTGCTTAACGATCTGGACAACGATGTGGCTTACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCGGTGGGGCGCCGAggc > 2:65678/1‑88 (MQ=255) gCATCTGCTTAACGATCTGGACAACGATGTGGCTTACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCGGTGGGACGCCGCGccc > 2:26454/1‑89 (MQ=255) gCATCTGCTTAACGATCTGGACAACGATGTGGCTTACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCGGTGGGACGCCGAGccc > 2:493287/1‑89 (MQ=255) tCTGCTTAACGATCTGGACAACGATGTGGCTTACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCGGGGGGGCGCCGGGCCCGCt > 1:219458/1‑90 (MQ=255) aaCGATCTGGACAACGATGTGGCTTACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCGGTGGTACGCCGAGCCTGCTTTccggc < 1:760662/90‑1 (MQ=255) aaCGATCTGGACAACGATGTGGCTTACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCGGTGGGACGCCGAGCCTGCTTTcccgc > 2:416747/1‑90 (MQ=255) cTGGACAACGATGTGGCTTACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCGGTGGTACGCCGAGCCTGCTTTCCGGCCCGGCg < 1:179195/90‑1 (MQ=255) tGGACAACGATGTGGCTTACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCGGTGGGACGCCGAGCCTGCTTTTCGGCCCGGCGa > 2:264393/1‑90 (MQ=255) aCGATGTGGCTTACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCggtggt < 1:62475/56‑1 (MQ=255) aCGATGTGGCTTACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCggtggt > 2:62475/1‑56 (MQ=255) aCGATGTGGCTTACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCGGTGGGACCCCGCGCCCGCTTTCCGGCCCGGCGGAGCaaa > 2:179195/1‑90 (MQ=255) cGATGTGGCTTACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCGGTGGTACGCCGAGCCTGCTTTCCGGCCCGGCGATGCAAAc < 2:427227/90‑1 (MQ=255) aTGTGGCTTACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCGGTGGTACGCCGAGCCTGCTTTCCGGCCCGGCGATGCAAACgc < 2:23247/90‑1 (MQ=255) gtgGCTTACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCGGTGGGACGCCGGGCCTGCTTTCCGGCCCGGCGGTGCAAACgctg > 2:436002/1‑90 (MQ=255) tACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCGGTGGTACGCCGGGCCCGCTTTTCCGCCCCGCGATGGAAACGCTGCTgggg > 1:156596/1‑88 (MQ=255) aCGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCGGGGGGGCGCCGCGCCCGCTTTTCCGCCCGGCGCTGCAAACGCTGCTggggg > 1:190300/1‑87 (MQ=255) ccGTGAAGTAAAGACAATCTTTATTGGCGGTGGGGCGCCGAGCCCGCTTTTCGGCCCCGCGGAGCAAAAGCCGCTGGGAGGGgcgcgtgc > 1:341406/1‑90 (MQ=255) gTGAAGTAAAGACAATCTTTATTGGCGGTGGGACGCCGAGCCTGCTTTCCGGCCCGGCGATGCAAACGCTGCTGGGCGGCGGGCGTgcgc > 2:128603/1‑90 (MQ=255) gTGAAGTAAAGACAATCTTTATTGGCGGGGGGGAACCCAGCCCGCTTTCCGGCCCCGCGGTGCAAAAGCTCCTGGGCGGCGGGGGTgggc > 1:414027/1‑90 (MQ=255) tGAAGTAAAGACAATCTTTATTGGCGGTGGTACGCCGAGCCTGCTTTCCCGCCCGGCGATGCAAACGCTGCTGGGCGGCGTGCGTGggcg > 2:641403/1‑90 (MQ=255) gTAAAGACAATCTTTATTGGCGGTGGTACGCCGAGCCTGCTTTCCGGCCCGGCGATGCAAACGCTGCTGGACGGCGTGCGTGCGCGTTTg > 2:318245/1‑90 (MQ=255) aaaGACAATCTTTATTGGCGGTGGGGCCCCGCGGCTGCTTTCCGGCCCGGCGACGCAAACCCCTCGGGGCGGCGTGCGCGCGCGTTTGcc > 2:583298/1‑90 (MQ=255) aaaGACAATCTTTATTGGCGGGGGGGAGCCGAGGCCGCTTTTCGGCCCCGCGGTGCAAAACCCGCTTGGCGGGGGGCGGGGGCGGTTGcc > 1:733571/1‑90 (MQ=255) tCTTTATTGGCGGTGGGACGCCGAGCCCGCTTTTCCGCCCCGCGATGCAAACGCTGCTGGGCGGCGGGGGGGCGCGGTTTCCGCCggggg > 1:448630/1‑87 (MQ=255) cTTTATTGGCGGTGGTACGCCGAGCCTGCTTTCCGGCCCGGCGATGCAAACGCTGCTGGACGGCGTGCGTGCGCGTTTGCCGCTGGCAGc < 1:266140/90‑1 (MQ=255) tttATTGGCGGTGGTACGCCGAGCCTGCTTTCCGGCCCGGCGATGCAAACGCTGCTGGACGGCGTGCGTGCGCGTTTGCCGCTGGCAGCg < 1:318245/90‑1 (MQ=255) ttGGCGGTGGTACGCCGAGCCTGCTTTCCGGCCCGGCGATGCAAACGCTGCTGGACGGCGTGCGTGCGCGTTTGCCGCTGGCAGCGGATg < 2:219458/90‑1 (MQ=255) gCGGTGGTACGCCGAGCCTGCTTTCCGGCCCGGCGATGCAAACGCTGCTGGACGGCGTGCGTGCGCGTTTGCCGCTGGCAGCGGATGCAg < 1:660391/90‑1 (MQ=255) ggtACGCCGAGCCTGCTTTCCGGCCCGGCGATGCAAACGCTGCTGGACGGCGTGCGTGCGCGTTTGCCGCTGGCAGCGGATGCAGAAAtt < 1:648548/90‑1 (MQ=255) | TGTTCAGCATCTGCTTAACGATCTGGACAACGATGTGGCTTACGCTCAGGGCCGTGAAGTAAAGACAATCTTTATTGGCGGTGGTACGCCGAGCCTGCTTTCCGGCCCGGCGATGCAAACGCTGCTGGACGGCGTGCGTGCGCGTTTGCCGCTGGCAGCGGATGCAGAAATT > NZ_CP009273/3090742‑3090913 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |