Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3790495	3790549	55	2 [0]	[1] 2	waaL	O‑antigen ligase

GCTATAGTTTGCTTATTGTCACTAATTTTACGTGGCA  >  NZ_CP009273/3790458‑3790494                                     | gCTATAGTTTGCTTATTGTCACTAATTTTACGTGGCa  >  1:244619/1‑37 (MQ=255) gCTATAGTTTGCTTATTGTCACTAATTTTACGTGGCa  <  2:244619/37‑1 (MQ=255)                                     | GCTATAGTTTGCTTATTGTCACTAATTTTACGTGGCA  >  NZ_CP009273/3790458‑3790494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑