Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1242683	1242693	11	2 [0]	[0] 9	treA	alpha,alpha‑trehalase

GCGGCCCTAATAAAATATCAGGCGGCTGTGGTGTTACCGGTGTTTCTTCTGCCTGCACCGATAGCGCAGCGAAACACAAAAAGATACAGG  >  NZ_CP009273/1242694‑1242783 |                                                                                          gCGGCCCTAATAAAATATCAGGCGGCTGTGGTGTTACCGGTGTTTCTTCTGCCTGCACCGATAGCGCAGCGAAacac               <  1:194821/77‑1 (MQ=255) gCGGCCCTAATAAAATATCAGGCGGCTGTGGTGTTACCGGTGTTTCTTCTGCCTGCACCGATAGCGCAGCGAAacac               >  2:194821/1‑77 (MQ=255) gCGGCCCTAATAAAATATCAGGCGGCTGTGGTGTTACCGGTGTTTCTTCTGCCTGCACCGATAGCGCAGCGAAACACAAAAAGATAc     <  1:206519/87‑1 (MQ=255) gCGGCCCTAATAAAATATCAGGCGGCTGTGGTGTTACCGGTGTTTCTTCTGCCTGCACCGATAGCGCAGCGAAACACAAAAAGATAc     >  2:206519/1‑87 (MQ=255) gCGGCCCTAATAAAATATCAGGCGGCTGTGGTGTTACCGGTGTTTCTTCTGCCTGCACCGATAGCGCAGCGAAACACAAAAAGATACAgg  >  1:22376/1‑90 (MQ=255) gCGGCCCTAATAAAATATCAGGCGGCTGTGGTGTTACCGGTGTTTCTTCTGCCTGCACCGATAGCGCAGCGAAACACAAAAAGATACAgg  >  1:299006/1‑90 (MQ=255) gCGGCCCTAATAAAATATCAGGCGGCTGTGGTGTTACCGGTGTTTCTTCTGCCTGCACCGATAGCGCAGCGAAACACAAAAAGATACAgg  >  2:192878/1‑90 (MQ=255) gCGGCCCTAATAAAATATCAGGCGGCTGTGGTGTTACCGGTGTTTCTTCTGCCTGCACCGATAGCGCAGCGAAACACAAAAAGATACAgg  >  2:43642/1‑90 (MQ=255) gCGGCCCTAATAAAATATCAGGCGGCTGTGGTGTTACCGGTGTTTCTTCTGCCTGCACCGATAGCGCAGCGAAACACAAAAAGATACAgg  >  2:45382/1‑90 (MQ=255) |                                                                                          GCGGCCCTAATAAAATATCAGGCGGCTGTGGTGTTACCGGTGTTTCTTCTGCCTGCACCGATAGCGCAGCGAAACACAAAAAGATACAGG  >  NZ_CP009273/1242694‑1242783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑