| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 381,253 | 0 | T | G | 58.3% | 7.5 / 12.7 | 12 | V189G (GTG→GGG) | tauA | taurine ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (0/5); new base G (7/0); total (7/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.26e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.93e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAACGCCCTGGAAAAAGACGGCAAGGTGTTGACCGATTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGCAAAGATTTTGCCGAG > NZ_CP009273/381166‑381332 | cgATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAACGCCCTGGAAAAAGACGGCAAGgtgt < 2:466017/90‑1 (MQ=255) aTCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAACGCCCTGGAAAAAGACGGCAAGGTGTTGAcc < 1:204091/90‑1 (MQ=255) tGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAACGCCCCGGGAAAAAAAGGCAAGGGGTTGACCGATTc > 2:343523/1‑90 (MQ=255) ggCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAACGCCCTGGAAAAAAACGGCAAGGGGTTGACCGATTCTGaaa > 2:271540/1‑89 (MQ=255) ggggAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAACGCCCTGGAAAAAGACGGCAAGGTGTTGACCGATTCTGAACAGGTCg < 1:168630/90‑1 (MQ=255) tGGTGCTTATGTCTGGGCACCGGCGGTTAACGCCCCGGAAAAAAACGGGAAGGGGTTGGGCGATTCTGAACAGGGCGGGGAggggggggg > 1:84591/1‑87 (MQ=255) gTGCTTATGTCTGGGCACCGGCGGTTTAAGCCCTGGGAAAAAAAGGGAAGGGGGTGGCCGATTTTTAACAGGGCGGGGAGGGGGgggcgc > 1:456323/1‑90 (MQ=255) gTGCTTATGTCTGGGCACCGGCGGTTAACGCCCTGGAAAAAAACGGCAAGGGGTTGACCGATTTTGGAAAGGGCGGGGAGGGGGgggcgc > 1:111447/1‑90 (MQ=255) tCTGGGCACCGGCGGTTAACGCCCTGGAAAAAGACGGCAAGGTGTTGACCGATTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTgg < 1:344864/90‑1 (MQ=255) cTGGGCACCGGCGGTTAACGCCCTGGAAAAAGACGGCAAGGGGTTGACCGATTCTGAACAGGGCGGGCAGGGGGGCGCGCCAACGCTggg > 2:284346/1‑89 (MQ=255) gggCACCGGCGGTTAACGCCCTGGAAAAAGACGGCAAGGGGTTGACCGATTCTGAAAAGGGCGGGCAGGGGGGGGCGCCAACGCTGGACg > 2:306597/1‑90 (MQ=255) aaGACGGCAAGGTGTTGACCGATTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGCAAAGATTTTGCCg < 2:174553/90‑1 (MQ=255) gACGGCAAGGTGTTGACCGATTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGCAAAGATTTTGCCgag < 2:279828/90‑1 (MQ=255) | CGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAACGCCCTGGAAAAAGACGGCAAGGTGTTGACCGATTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGCAAAGATTTTGCCGAG > NZ_CP009273/381166‑381332 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |