| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,679,381 | 0 | A | C | 57.1% | ‑5.0 / 20.5 | 21 | G1051G (GGT→GGG) | bcsC | cellulose synthase complex outer membrane protein BcsC |
| Reads supporting (aligned to +/- strand): ref base A (8/1); new base C (0/12); total (8/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.42e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCC‑GTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGAC > NZ_CP009273/3679318‑3679457 | cAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCC‑Gt < 2:125544/90‑1 (MQ=255) gATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCC‑GTgc > 1:107808/1‑90 (MQ=255) ttCACCAGCGGATAACGCGGCATGGTTTTGGTGCGTGAATGCGCCCACGACCCAGACGCCCCCAGCCCCCCCGACCAGTTTTCC‑GTgcgc < 2:762355/90‑1 (MQ=255) gggAGAACGAGGAATGGTTTTGGGGCGTGAAAGCCACCCCGACCCAGCCGCCCCCACCTCCCACGGCCAATTTCCC‑GTGCGCTCCCGCca < 1:265330/89‑1 (MQ=255) tAACGCGGCATGGTTTTGGTGCGTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCC‑GTGCGCTCCCGCCACATc > 2:477219/1‑90 (MQ=255) aaCGCGGCATGTTTTTGGGGCGTAAATGCGCCCCCGAGCCAGCCGCCCCCAGCCCCCACGACCATTTTTCC‑GTGCGCTCCCGCCACATCa < 1:374581/90‑1 (MQ=255) cggggCAGGTTTTTGGGGCGTGAAGGCGCCCGCGGGCCAGCCCCCCCCGCCCCCCCCGACC‑GTTTTCCGGTGCCCTCCCGCCACATCAcc < 2:185578/87‑1 (MQ=255) cATGGTTTTGGTGCGTGAATGCGCCCACGAGCCAGACGCCCCCAGCTCCCACGACCATTTTTCC‑GTGCGCTCCCGCCACATCACCGGTAt < 1:52258/90‑1 (MQ=255) ggTGCGTGAATGCGCCCCCGAGCCAGCCGCCCCCACCCCCCACGACCATTTTTCC‑GTGCGCTCCCGCCACATCACCGGTATGGCAAACGa < 2:134982/90‑1 (MQ=255) ggTGCGTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCC‑GTGCGCTCCCGCCACATCACCGGTATGGCAAACGa > 2:171930/1‑90 (MQ=255) gTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCC‑GTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGt > 1:588210/1‑90 (MQ=255) gTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCC‑GTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGt > 2:337037/1‑90 (MQ=255) gTGAATGCAACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCC‑GTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGt > 1:434135/1‑90 (MQ=255) gcccACGCCCCAGCCCCCCCCACCCCCCCCGACCTTTTTTCC‑GCGCCCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGc < 2:259281/88‑1 (MQ=255) cctcGAGCCAACCGCCCCCAGCCCCCACAACCTTTTTTCT‑GCGCCCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCgg < 2:434135/87‑1 (MQ=255) ccACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCC‑GTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCgg > 1:259281/1‑90 (MQ=255) cggAGCCAGCCCCCCCCAGCCCCCCAGCCCGTTTTTCC‑GTACACCCCCGCCACATCCCCGGTATGGCAAACGACAGGTATTCCTGCGGAc < 2:278944/88‑1 (MQ=255) ccgcgCCAGCCCCCCCCGGCCCCCACGACCAGTTTTCC‑GGGCCCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGAc < 2:384408/86‑1 (MQ=255) aCGAGCCAGCCCCCCCCCCCCCCCACGCCCTTTTTTCC‑GTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGAc < 2:228596/90‑1 (MQ=255) aCGAGCCAGACGCCCCCGGCCCCCACGCCCATTTTTCC‑GTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGAc < 1:183696/90‑1 (MQ=255) aCGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCC‑GTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGAc > 1:321060/1‑90 (MQ=255) | CAGATTCATCAGCGGATAACGCGGCATGGTTTTGGTGCGTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCC‑GTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGAC > NZ_CP009273/3679318‑3679457 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |