| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,699,021 | 0 | T | C | 55.6% | ‑1.8 / 17.6 | 18 | I44V (ATC→GTC) | dppB | dipeptide ABC transporter permease DppB |
| Reads supporting (aligned to +/- strand): ref base T (8/0); new base C (0/10); total (8/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.29e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AATGGAGATACTGCTGCCACATCGGTTTATCTAAGCCGAGTTCAGCCAGCAGCTGCGCGTGACGCTCTGGGGAGATCCCACGTTCGCCCGCCATGATCATCACCGGATCGCCCGGGATCATGTGGACAAAGGCAAATGTGAGAAGGGTAATACCGATAAACGT > NZ_CP009273/3698946‑3699108 | aaTGGAGATACTGCTGCCACATCGGTTTATCTAAGCCGAGTTCAGCCAGCAGCTGCGCGTGACGCTCTGGGGAGATCCCACGTTcgcccg > 2:555622/1‑90 (MQ=255) gaTACTGCTGCCACATCGGTTTATCTAAGCCGAGTTCAGCCAGCAGCTGCGCGTGACGCTCTGGGGAGATCCCACGTTCGCCCGCCATGa > 1:102177/1‑90 (MQ=255) tACTGCTGCCACATCGGTTTATCTAAGCCGAGTTCAGCCAGCAGCTGCGCGTGACGCTCTGGGGAGATCCCACGTTCGCCCGCCATGatc > 1:621233/1‑90 (MQ=255) ccttCGTTTTATCTAGGCCGATTTCAGCCAGCGGCTGCGGGGGCCGCTGGGGGGAGCCCCCGCGTTCGCCCGCCATGATCATCACCGGAt < 1:738609/87‑1 (MQ=255) ccaTCGTTTTATCAAGGCCGAGTTCAGCCAGCGGCGGCGCGTGCCGCTCGGGGGAGACCCCCCGTCCGCCCGCCATGATCATCACCGGAt < 1:264961/89‑1 (MQ=255) acaTCGGTTTATCTAAGCCGAGTTCAGCCAGCAGCTGCGCGTGACGCTCTGGGGAGATCCCACGTTCGCCCGCCATGATCATCACCGGAt > 2:208697/1‑90 (MQ=255) aaGCCGATTCCAGCCAGCGGCGGCGGGGGCCGCTGGGGGGAGACCCCACGTTCCCCCGCCATGATCATCACCGGATCGCCCGGGATCAtg < 1:64630/90‑1 (MQ=255) aGCCGAGTTCAGCCAGCAGCTGCGCGTGACGCTCTGGGGAGATCCCACGTTCGCCCGCCATGATCATCACCGGATCGCCCGGGATCAtgt > 1:314111/1‑90 (MQ=255) aGCCGAGTTCAGCCAGCAGCTGCGCGTGACGCTCTGGGGAGATCCCACGTTCGCCCGCCATGATCATCACCGGATCGCCCGGGATCAtgt > 1:415402/1‑90 (MQ=255) aGTCCACCCAGCAGCTGCGCGTGACGCTCGGGGGAGACCCCCCGTTCCCCCGCCATGATCATCACCGGATCGCCCGGGATCATGTGGACa < 1:119155/90‑1 (MQ=255) tgggcgGGACGCTGGGGGGAGCCCCCGCGTCCGCCCGCCATGATCATCACCGGATCGCCCGGGATCATGTGGACAAAGGCAAATGTgaga < 2:766321/87‑1 (MQ=255) tGCGCGTGACGCTTGGGGGAGACCCCCCTTTCCCCCGCCATGATCATCACCGGATCGCCCGGGATCATGTGGACAAAGGCAAATGTgaga < 1:115470/90‑1 (MQ=255) ggcgcGTGCCGCTGTGGGGAGTCCCCCCGTCCCCCCGCCATGATCATCACCGGATCGCCCGGGATCATGTGGACAAAGGCAAATGTgaga < 1:434373/89‑1 (MQ=255) ggcgcGTGACGCTGGGGGGAGACCCCCCGTTCGCCCGCCATGATCATCACCGGATCGCCCGGGATCATGTGGACAAAGGCAAATGTgaga < 1:208697/89‑1 (MQ=255) ggcgcGGGCCGCTGGGGGGAGACCCCACGTCCGCCCGCCATGATCATCACCGGATCGCCCGGGATCATGTGGACAAAGGCAAATGTgaga < 1:555622/89‑1 (MQ=255) gcggcgTGCCGCTGGGGGGAGCCCCCGCTTCCGCCCGCCATGATCATCACCGGATCGCCCGGGATCATGTGGACAAAGGCAAATGTgaga < 2:451197/87‑1 (MQ=255) gACGCTCTGGGGAGATCCCACGTTCGCCCGCCATGATCATCACCGGATCGCCCGGGATCATGTGGACAAAGGCAAATGTGAGAAGGGTaa > 1:547969/1‑90 (MQ=255) gaTCCCACGTTCGCCCGCCATGATCATCACCGGATCGCCCGGGATCATGTGGACAAAGGCAAATGTGAGAAGGGTAATACCGATAAACGt > 1:270681/1‑90 (MQ=255) | AATGGAGATACTGCTGCCACATCGGTTTATCTAAGCCGAGTTCAGCCAGCAGCTGCGCGTGACGCTCTGGGGAGATCCCACGTTCGCCCGCCATGATCATCACCGGATCGCCCGGGATCATGTGGACAAAGGCAAATGTGAGAAGGGTAATACCGATAAACGT > NZ_CP009273/3698946‑3699108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |