| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 519440 = | 13 (0.450) | 4 (0.150) | 4/154 | 1.8 | 26.0% | coding (724/4281 nt) | rhsD | rhs element protein RhsD |
| ? | NZ_CP009273 | 519532 = | 11 (0.420) | coding (816/4281 nt) | rhsD | rhs element protein RhsD | |||||
CCGCTTCGGGCGGACGCTGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGC > NZ_CP009273/519358‑519529 | ccGCTTCGGGCGGACGCTGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGa > 2:344801/1‑90 (MQ=255) gCTTCGGGCGGACGCTGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt > 2:581264/1‑90 (MQ=255) gTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCAc < 2:7120/90‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgcgc < 1:28741/90‑1 (MQ=255) gAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAg > 2:49599/1‑90 (MQ=255) ggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGc < 1:702204‑M1/40‑1 (MQ=255) gtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGc > 2:702204‑M1/47‑90 (MQ=255) gggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgcgc > 1:534888‑M1/35‑71 (MQ=255) gggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGgcgc < 2:534888‑M1/37‑1 (MQ=255) ggCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGGGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCg > 1:282706/1‑90 (MQ=255) gggAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACct > 1:493435/1‑90 (MQ=255) ggAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACctc < 2:253276/90‑1 (MQ=255) aaaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCtt < 2:727355/90‑1 (MQ=255) ggcgggTGCCGGGGGGGAGTTCCGTCGGGTGCTGCCCACGCAGGCGCAGCGGGGGGAAGAGGCCCGCCCCTCTTCGCTATCTTCTTCTGa < 1:608015/86‑1 (MQ=25) acggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACa < 2:493435/90‑1 (MQ=255) gTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAag < 1:836751/54‑1 (MQ=255) gTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAag > 2:836751/1‑54 (MQ=255) GGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGc < 2:657187‑M1/90‑1 (MQ=255) | CCGCTTCGGGCGGACGCTGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGC > NZ_CP009273/519358‑519529 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |