| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3824404 | 26 (0.890) | 3 (0.120) | 3/148 | 2.0 | 9.7% | coding (588/1710 nt) | yicH | AsmA family protein |
| ? | NZ_CP009273 | = 3824452 | 33 (1.300) | coding (636/1710 nt) | yicH | AsmA family protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCG > NZ_CP009273/3824316‑3824493 | aGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGa < 1:192005/90‑1 (MQ=255) gTTTAGTGCCGGATCGCTTCCGCTCAATGCTGTTCCTGCCCCCAATGTACTGATTGAAGCCAGTATTGATAACGACCGCGTTACGCTGAc < 1:170607/90‑1 (MQ=255) aGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGcgcgtt > 1:564497‑M1/1‑84 (MQ=255) tGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCt > 2:134055/1‑90 (MQ=255) ccGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTgg > 2:675682/1‑90 (MQ=255) ggATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGt > 1:60435/1‑90 (MQ=255) gCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGa > 1:821825/1‑90 (MQ=255) atgatgTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACTCTGACTAACCTGGGGGCCGACATCGCCcgcg > 1:734389/1‑90 (MQ=255) atgatgTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCcgcg < 2:672514/90‑1 (MQ=255) atgatgTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCcgcg < 2:60435/90‑1 (MQ=255) tgatgTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCgg < 1:675682/90‑1 (MQ=255) ttCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACAt < 2:503941/90‑1 (MQ=255) tGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcac > 1:292515‑M1/1‑52 (MQ=255) tGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTg > 2:403289/1‑65 (MQ=255) tGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTg < 1:403289/65‑1 (MQ=255) tGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAAc > 1:638157/1‑90 (MQ=255) gCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacc < 2:564497‑M1/90‑40 (MQ=255) aTGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAAcg > 1:401967/1‑90 (MQ=255) tACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGc > 1:542145‑M2/1‑89 (MQ=255) gATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcagcg < 1:469620‑M2/90‑6 (MQ=255) gATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcagcg < 2:422923‑M2/90‑6 (MQ=255) gATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcagcg < 1:804499‑M2/90‑6 (MQ=255) ttGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcagcgta > 1:807033‑M2/1‑83 (MQ=255) ttGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcagcgta < 2:753704‑M2/90‑8 (MQ=255) aaGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcagcgtaacg < 2:611961‑M2/90‑11 (MQ=255) aaGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcagcgtaacg < 2:216097‑M2/90‑11 (MQ=255) aGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGAc > 2:10264/1‑90 (MQ=255) gATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGc > 2:144396/1‑90 (MQ=255) tAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTg > 2:720290/1‑90 (MQ=255) aaCGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTgg > 1:71320/1‑90 (MQ=255) cGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCa > 1:28374/1‑90 (MQ=255) cGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCa > 2:718866/1‑90 (MQ=255) aTCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAg > 2:626047/1‑90 (MQ=255) cgTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccaggttagtcagcgtaacgcgatcgttatcaatactgcctt < 2:216097‑M1/90‑81 (MQ=255) cgTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccaggttagtcagcgtaacgcgatcgttatcaatactgcctt < 2:611961‑M1/90‑81 (MQ=255) tACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccaggttagtcagcgtaacgcgatcgttatcaatactgccttcaa < 2:753704‑M1/90‑84 (MQ=255) tACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccaggttagtcagcgtaacgcgatcgttatcaatactgccttcaa > 1:807033‑M1/1‑7 (MQ=255) cGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccaggttagtcagcgtaacgcgatcgttatcaatactgccttcaatc < 2:422923‑M1/90‑86 (MQ=255) cGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccaggttagtcagcgtaacgcgatcgttatcaatactgccttcaatc < 1:469620‑M1/90‑86 (MQ=255) cGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccaggttagtcagcgtaacgcgatcgttatcaatactgccttcaatc < 1:804499‑M1/90‑86 (MQ=255) cGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAAcc < 2:721269/90‑1 (MQ=255) gcgcgtttccggttaatgtcccgcgggcgatgtcggcacccaggttagtcagcgtaacgcgatcgttatcaatactgccttcaatcagta > 1:542145‑M1/1‑1 (MQ=255) gcgcgtttccggttaatgtcccgcgggcgatgtcgg > 2:833988‑M1/1‑1 (MQ=255) gcgcgtttccggttaatgtcccgcgggcgatgtcgg < 1:833988‑M1/36‑36 (MQ=255) gACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCaa < 2:190547/76‑1 (MQ=255) gACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCaa > 1:190547/1‑76 (MQ=255) gACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTgcg > 2:260758/1‑90 (MQ=255) | AGTTTAGTGCCGGATCGCTTTCGCTCAATGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCG > NZ_CP009273/3824316‑3824493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |