| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3851565 | 52 (1.780) | 5 (0.200) | 5/144 | 1.4 | 10.8% | coding (200/1494 nt) | yidJ | sulfatase‑like hydrolase/transferase |
| ? | NZ_CP009273 | = 3851588 | 39 (1.580) | coding (177/1494 nt) | yidJ | sulfatase‑like hydrolase/transferase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGTGATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCC > NZ_CP009273/3851481‑3851654 | gtgtGATAGCCGGCATCCTTAAAGTGGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa < 1:198448/90‑1 (MQ=255)gtgtGATAGCCGGCATCCTTAAAGTAGGGCCCCATAGTGGAGATGTTTTTCCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa < 2:402314/90‑1 (MQ=255) tgtgATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAg > 1:68814/1‑90 (MQ=255) tgtgATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAg > 1:693797/1‑90 (MQ=255) tgtgATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAg > 1:449631/1‑90 (MQ=255) tatgATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAg > 2:727451/3‑90 (MQ=255) gtgATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa > 1:587787/1‑88 (MQ=255) gtgATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa < 2:587787/88‑1 (MQ=255) gtgATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGc > 1:640338/1‑90 (MQ=255) gATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGt > 2:687658/1‑90 (MQ=255) gATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGt > 2:12732/1‑90 (MQ=255) gCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGAt < 1:292414/90‑1 (MQ=255) gCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGAt < 2:387793/90‑1 (MQ=255) gCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGAt < 2:528425/90‑1 (MQ=255) ccGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATa > 2:639146/1‑90 (MQ=255) cGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGACGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATAc < 1:259593/90‑1 (MQ=255) gCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGCCGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCg < 2:347402/90‑1 (MQ=255) gCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGtt < 2:407913/77‑1 (MQ=255) gCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGtt > 1:407913/1‑77 (MQ=255) cATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCgg < 2:51159/90‑1 (MQ=255) tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATa > 2:353152‑M2/1‑89 (MQ=255) aGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtc > 1:727451‑M2/1‑86 (MQ=255) aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGGCTGGTTAGCGTAGATACCGGTAAATagtccgg > 1:257261‑M2/1‑83 (MQ=255) aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTatttaccggtatctacgctaaccagtccgg > 2:672015‑M1/1‑60 (MQ=255) aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccgg < 2:39639‑M2/90‑8 (MQ=255) gcgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTatttaccggtatctacgctaaccagtccggc > 1:385080‑M1/1‑59 (MQ=255) gcgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaaa > 2:9292/1‑81 (MQ=255) gcgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaaa < 1:9292/81‑1 (MQ=255) gcgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggc < 2:4805‑M2/90‑9 (MQ=255) gcgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggc < 2:246628‑M2/90‑9 (MQ=255) gcgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggc < 2:450751‑M2/90‑9 (MQ=255) gcgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggc < 1:102378‑M2/90‑9 (MQ=255) gcgcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGCACCACGGGCCGGACTGGTTAGCGCATATACCGGCAAATagtccggc < 1:367924‑M2/90‑9 (MQ=255) ccATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccgtg < 1:31745‑M2/90‑14 (MQ=255) cATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGc < 1:486764/90‑1 (MQ=255) cATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGc < 1:830269/90‑1 (MQ=255) aGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg < 2:637190/90‑1 (MQ=255) gTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAg < 1:657569/88‑1 (MQ=255) gTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAg > 2:657569/1‑88 (MQ=255) ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccgtggaccaac > 1:127464‑M2/1‑70 (MQ=255) gagaTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTa > 2:477652/1‑90 (MQ=255) gaTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACa > 1:741939/1‑90 (MQ=255) gaTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACa > 2:663439/1‑90 (MQ=255) tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGAt > 2:770813/1‑55 (MQ=255) tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGAt < 1:770813/55‑1 (MQ=255) tttttGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc < 2:364817/90‑1 (MQ=255) ttttGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg > 2:49663/1‑90 (MQ=255) ttttGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg > 2:262789/1‑90 (MQ=255) tttGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCgg < 1:639146/90‑1 (MQ=255) ttGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGAt < 1:562419/50‑1 (MQ=255) ttGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGAt > 2:562419/1‑50 (MQ=255) tGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccgtggaccaacaacgtcgcgcc > 1:241725‑M2/1‑59 (MQ=255) gCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccgtggaccaacaacgtcgcgcca > 1:520185‑M2/1‑58 (MQ=255) ccTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGaa < 2:577214/90‑1 (MQ=255) tGGCGCGACGTTGTTGGTCCACGGGCCGGACTatttaccggtatctacgctaaccagtccggcccgtggaccaacaacgtcgcgccaggc > 1:520185‑M1/1‑32 (MQ=255) ggCGCGACGTTGTTGGTCCACGGGCCGGACTatttaccggtatctacgctaaccagtccggcccgtggaccaacaacgtcgcgccaggca > 1:241725‑M1/1‑31 (MQ=255) ggCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGc < 1:220802/68‑1 (MQ=255) ggCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGc > 2:220802/1‑68 (MQ=255) ggCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg < 1:159142/90‑1 (MQ=255) ggCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg > 2:788520/1‑90 (MQ=255) ggCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg > 1:272579/1‑90 (MQ=255) ggCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg > 2:174637/1‑90 (MQ=255) ggCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg > 2:332334/1‑90 (MQ=255) cgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgtgt < 1:515654/90‑1 (MQ=255) gACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTa > 2:464839/1‑90 (MQ=255) aCGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg > 1:419586/1‑90 (MQ=255) gttgttGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGc < 1:246628/90‑1 (MQ=255) gttgGTCCACGGGCCGGACTatttaccggtatctacgctaaccagtccggcccgtggaccaacaacgtcgcgccaggcaaaaacatctcc > 1:127464‑M1/1‑20 (MQ=255) cACGGGCCGGACTatttaccggtatctacgctaaccagtccggcccgtggaccaacaacgtcgcgccaggcaaaaacatctccactatgg < 1:31745‑M1/90‑78 (MQ=255) gggCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa > 1:208993/1‑90 (MQ=255) gCCGGACTatttgccggtatatgcgctaaccagtccggcccgtggtgcaacaacgtcgcgccaggcaaaaacatctccactatggggcgc < 1:367924‑M1/90‑83 (MQ=255) gCCGGACTatttaccggtatctacgctaaccagtccggcccgtggaccaacaacgtcgcgccaggcaaaaacatctccactatggggcgc < 2:246628‑M1/90‑83 (MQ=255) gCCGGACTatttaccggtatctacgctaaccagtccggcccgtggaccaacaacgtcgcgccaggcaaaaacatctccactatggggcgc < 2:450751‑M1/90‑83 (MQ=255) gCCGGACTatttaccggtatctacgctaaccagtccggcccgtggaccaacaacgtcgcgccaggcaaaaacatctccactatggggcgc < 2:4805‑M1/90‑83 (MQ=255) gCCGGACTatttaccggtatctacgctaaccagtccggcccgtggaccaacaacgtcgcgccaggcaaaaacatctccactatggggcgc < 1:102378‑M1/90‑83 (MQ=255) gCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccgtggaccaacaacgtcgcgccaggcaaaaacatctccactatggggcgc > 1:385080‑M2/1‑31 (MQ=255) ccGGACTatttaccggtatctacgctaaccagtccggcccgtggaccaacaacgtcgcgccaggcaaaaacatctccactatggggcgct < 2:39639‑M1/90‑84 (MQ=255) ccGGACTatttaccggtatctacgctaaccagcccggcccgtggaccaacaacgtcgcgccaggcaaaaacatctccactatggggcgct > 1:257261‑M1/1‑7 (MQ=255) ccGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccgtggaccaacaacgtcgcgccaggcaaaaacatctccactatggggcgct > 2:672015‑M2/1‑30 (MQ=255) gACTatttaccggtatctacgctaaccagtccggcccgtggaccaacaacgtcgcgccaggcaaaaacatctccactatggggcgctact > 1:727451‑M1/1‑4 (MQ=255) tatttaccggtatctacgctaaccagtccggcccgtggaccaacaacgtcgcgccaggcaaaaacatctccactatggggcgctacttta > 2:353152‑M1/1‑1 (MQ=255) tGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc < 1:12732/90‑1 (MQ=255) | GTGTGATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCC > NZ_CP009273/3851481‑3851654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |