| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4306903 = | 20 (0.690) | 3 (0.110) | 3/158 | 2.1 | 9.9% | coding (133/1137 nt) | phnM | alpha‑D‑ribose 1‑methylphosphonate 5‑triphosphate diphosphatase |
| ? | NZ_CP009273 | 4306956 = | 36 (1.330) | coding (80/1137 nt) | phnM | alpha‑D‑ribose 1‑methylphosphonate 5‑triphosphate diphosphatase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTGAAGAATTTATCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCACCTCCAGCGAACC > NZ_CP009273/4306814‑4306987 | agcctcttcatgattatcaataacgttaagctggtgctggaaaacgaggtggtaagcggttcgctggaggtgcagaacggcgaaatccgc > 1:758981‑M1/90‑90 (MQ=255) gcctcttcatgattatcaataacgttaagctggtgctggaaaacgaggtggtaagcggttcgctggaggtgcagaacggcgaaatccgcg < 2:281269‑M1/2‑1 (MQ=255) ggCAGGCCAGTCAACTTTCGGGCGCGGGGTGAAGAATTTATCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAgccgcc > 1:438744/1‑90 (MQ=255) ctcttcatgattatcaataacgttaagctggtgctggaaaacgaggtggtaagcggttcgctggaggtgcagaacggcgaaatccgCGcc < 2:732016‑M1/4‑1 (MQ=255) ctcttcatgattatcaataacgttaagctggtgctggaaaacgaggtggtaagcggttcgctggaggtgcagaacggcgaaatccgCGcc < 1:90873‑M1/4‑1 (MQ=255) tCGGGCGCGGGGTGAAGAATTTATCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCt > 2:170999/1‑90 (MQ=255) gggCGCGGGGTGAAGAATTTATCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTcc < 2:828484/90‑1 (MQ=255) cgGGGTGAAGAATTTATCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAg < 1:16098/90‑1 (MQ=255) tATCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCttt > 2:703203/1‑90 (MQ=255) tATCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCttt > 2:152438/1‑90 (MQ=255) aacgaggtggtaagcggttcgctggaggtgcagaacggcgaaatccgCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTc > 2:90873‑M1/48‑90 (MQ=255) tCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCACCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCg > 2:534845/1‑90 (MQ=255) aTGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGAt > 1:260585/1‑90 (MQ=255) gCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGAttt > 2:777470/1‑90 (MQ=255) cAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGt > 1:398988/1‑90 (MQ=255) cAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGt > 2:834022/1‑90 (MQ=255) gcagaacggcgaaatccgCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCa < 2:183504‑M1/72‑1 (MQ=255) gCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCa > 2:674511/1‑90 (MQ=255) ccccGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCAc > 2:433745/1‑90 (MQ=255) cccGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCAcc < 2:719999/90‑1 (MQ=255) cccGGCAGCAGCCAGCCGCCTTCGCCGTCCACCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCAcc < 1:39/90‑1 (MQ=255) cGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCACCTc > 1:724853/1‑90 (MQ=255) cagccagcCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGAt < 1:832042/66‑1 (MQ=255) cagccagcCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGAt > 2:832042/1‑66 (MQ=255) gccagccGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCACCTCCAGCGAAc > 2:345890/1‑90 (MQ=255) gccagccGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCACCTCCAGCGAAc < 2:764964/90‑1 (MQ=255) atccgCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCACCTCCAGCGAAcc < 2:102126‑M1/85‑1 (MQ=255) | GTGGGCAGGCCAGTCAACTTTCGGGCGCGGGGTGAAGAATTTATCCAGATTATCGGTATGCAGCTCAATCAGCCCCGGCAGCAGCCAGCCGCCTTCGCCGTCCATCGCCTCCGGCAGGCGGCTCTGGCTTTCGGCAAAGGCGCGGATTTCGCCGTTCTGCACCTCCAGCGAACC > NZ_CP009273/4306814‑4306987 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |