New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 4382322	22 (0.750)	5 (0.190)	5/154	1.5	19.3%	noncoding (34/76 nt)	BW25113_RS21640	tRNA‑Gly
	?	NZ_CP009273	= 4382323	22 (0.830)					noncoding (35/76 nt)	BW25113_RS21640	tRNA‑Gly
Rejected: Frequency below/above cutoff threshold.

TTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATAGCT  >  NZ_CP009273/4382242‑4382411                                                                                  |                                                                                         ttCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcg                                                                                  >  2:195621‑M2/1‑82 (MQ=255)   cccGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtg                                                                                >  2:139516‑M2/1‑80 (MQ=255)        tCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc                                                                           >  1:594414/1‑90 (MQ=255)                      aGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactgagctatt                                                             >  2:578779‑M2/1‑61 (MQ=255)                                 gCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactgagctattcccgcttgggt                                                  >  1:55919‑M2/1‑50 (MQ=255)                                           cccAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaa                                        >  2:465122/1‑90 (MQ=37)                                           cccAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaa                                        >  2:406342/1‑90 (MQ=37)                                           cccAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaa                                        >  2:142269/1‑90 (MQ=37)                                                gCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGc                                   >  2:500197/1‑90 (MQ=35)                                                    gAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgc                                                                               >  1:638546‑M2/1‑31 (MQ=255)                                                    gAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTa                               <  1:718675/90‑1 (MQ=39)                                                         gCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGca                          >  1:784361/1‑90 (MQ=255)                                                          cTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGcac                         <  2:784361/90‑1 (MQ=255)                                                             aGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGa                      >  1:235361/1‑90 (MQ=255)                                                             aGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGa                      >  1:49575/1‑90 (MQ=255)                                                              gTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGac                     >  2:332782/1‑90 (MQ=255)                                                              gTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGac                     >  1:323203/1‑90 (MQ=255)                                                                   tAGAGCACGTCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCAccc                <  1:74655/90‑1 (MQ=255)                                                                   tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCAccc                <  1:465122/90‑1 (MQ=255)                                                                   tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCAccc                <  1:328651/90‑1 (MQ=255)                                                                       gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGAAAGGCACAGACCGCCCAAGc            >  1:197985/1‑90 (MQ=255)                                                                          cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCggg         >  1:663234/1‑90 (MQ=255)                                                                          cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCggg         <  2:663234/90‑1 (MQ=255)                                                                           gACCTTGCcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcacttttcaaattttggagcgggaaa        <  1:33135‑M2/90‑83 (MQ=255)                                                                               ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGcac                         <  1:772784/69‑1 (MQ=255)                                                                               ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGcac                         >  2:772784/1‑69 (MQ=255)                                                                               ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATAg    >  2:72745/1‑90 (MQ=255)                                                                                 gCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATAGCt  <  1:274671/90‑1 (MQ=255)                                                                                  |                                                                                         TTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATAGCT  >  NZ_CP009273/4382242‑4382411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.