| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,620,602 | 0 | G | C | 53.3% | ‑0.1 / 11.0 | 15 | R346G (CGG→GGG) | dcp | peptidyl‑dipeptidase Dcp |
| Reads supporting (aligned to +/- strand): ref base G (4/3); new base C (8/0); total (12/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.69e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.00e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CACCTTCATTTAACACCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGTTCCGCATAAAATGCCCAGTCCCACGGCTGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGTATGG > NZ_CP009273/1620530‑1620685 | cacCTTCATTTAACACCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTTTCCCCCCGTACCTGTTCCGCAt > 1:837208/1‑90 (MQ=255)cacCTTCATTTAACACCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGTTCCGCAt > 2:603678/1‑90 (MQ=255)cacCTTCATTTAACACCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCCCCGTACCTGTTCCGCAt > 2:74388/1‑90 (MQ=255)cacCTTCATTTAACACCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAAATCAAATTTTTCCCCCCCTACCTGTTCCGCAt > 1:360466/1‑90 (MQ=255) ccTTCATTTAACACCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTTTCCCCCCGTACCTGTTCCGCATaa > 2:138877/1‑90 (MQ=255) cGTGTTTAATTCAAAATATGGCTTTAGCTGCGCCCCATCAAAATCAAATTTTTCCCCCCCTACCTGTTTCGCATAAAATGCCCCGTcccc > 1:715723/1‑89 (MQ=255) aaTTAAAAATATGGCTTGAGCCCCCCCTCATCAAGAAAAATTTTCTCCCGCCGTACCTGTTCCGCATAAAATGCCCAGTCCCACGGCTgc < 2:132435/90‑1 (MQ=255) cAAAATATGGCTTGAGGTGGGCCTCATCAAGATCAAATTTTTCCCCCCGTACCTGTTCCGCATAAAATGCCCAGTCCCACGGCTgcgcgc > 1:26876/1‑90 (MQ=255) tGGCTTGAGCTGCGCCTCATCAAGATCAAATTTTTCCCCCCCTACCTGTTCCCCATAAAATGCCCCATCCCCCGGCTGCGCGCTAAAacc > 1:642142/1‑90 (MQ=255) tGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGTTCCGCATAAAATGCCCCGTCCCACGGCTGCCCGCTAAACCCCCCct > 2:586464/1‑90 (MQ=255) tGAGCTGCGCCTCATCAAGATCAAACTTCTCCCCCCGTACCTGTTCCCCACAAAAAGCCCCGGCCCCCGGCTGAGCACTCAAACCGcccc > 1:263608/1‑89 (MQ=255) aaTTTCTCCCGCCGTACCTGTTCCGCATAAAATGCCCAGTCCCACGGCTGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGt > 1:439199/1‑90 (MQ=255) aaTTTCTCCCGCCGTACCTGTTCCGCATAAAATGCCCAGTCCCACGGCTGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGt > 1:707021/1‑90 (MQ=255) ccccccGCCGTCCCTGTTCCGCATAAAATGCCCAGCCCCACGGCTGCGCGCTAACCCCGCCCTGCTGCTTATCGATAACCGCCTGTATgg < 2:477308/87‑1 (MQ=255) ccccccGCCGTCCCTGTCCCGCAAAAAATGCCCAGCCCCACGGCTGCGCGCTAACCCCGCCCTGCTGCTTATCGATAACCGCCTGTATgg < 2:715723/87‑1 (MQ=255) | CACCTTCATTTAACACCGTGTTTAATTCAAAATATGGCTTGAGCTGCGCCTCATCAAGATCAAATTTCTCCCGCCGTACCTGTTCCGCATAAAATGCCCAGTCCCACGGCTGCGCGCTAAACCCGCCCTGCTGCTTATCGATAACCGCCTGTATGG > NZ_CP009273/1620530‑1620685 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |