Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	933527	933539	13	2 [0]	[1] 2	rarA	replication‑associated recombination protein RarA

TTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGC  >  NZ_CP009273/933486‑933526                                         | tttCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGc  <  1:301795/41‑1 (MQ=255) tttCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGc  >  2:301795/1‑41 (MQ=255)                                         | TTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGC  >  NZ_CP009273/933486‑933526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑