Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1193741	1193751	11	2 [0]	[0] 2	BW25113_RS05920/lit	hypothetical protein/cell death peptidase Lit

GTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGT  >  NZ_CP009273/1193675‑1193740                                                                  | gTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAgtgt  >  1:88342/1‑66 (MQ=255) gTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAgtgt  <  2:88342/66‑1 (MQ=255)                                                                  | GTTCGAACATATTATTCACCTGAGTCACGCTTTAGGATAGTGTAATGGTAATATTTAATTAAGTGT  >  NZ_CP009273/1193675‑1193740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑