Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	578861	578931	71	2 [1]	[0] 2	BW25113_RS26085/appY	tail fiber assembly protein/DNA‑binding transcriptional activator AppY

CGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAA  >  NZ_CP009273/578932‑578969 |                                      cGTTGAAAAATGTAACTTTGAAATAAGTTAGAATaaaa  >  1:167173/1‑38 (MQ=255) cGTTGAAAAATGTAACTTTGAAATAAGTTAGAATaaaa  <  2:167173/38‑1 (MQ=255) |                                      CGTTGAAAAATGTAACTTTGAAATAAGTTAGAATAAAA  >  NZ_CP009273/578932‑578969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑