Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 2,921,512 | 0 | C | T | 53.3% | 6.0 / 16.5 | 15 | intergenic (+481/‑76) | ppnN/sdaC | nucleotide 5'‑monophosphate nucleosidase PpnN/HAAAP family serine/threonine permease SdaC |
Reads supporting (aligned to +/- strand): ref base C (2/5); new base T (8/0); total (10/5) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.99e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.15e-03 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
ACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTAAGCCATCGCCGATAGACAGATTTCATTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAAC > NZ_CP009273/2921425‑2921595 | aCTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTAAACCATCGCCGATAGACAGATTTTAt > 2:261162/1‑90 (MQ=255) cATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAAAGATTAAAACATCCCCCATAGACAGATTTTTTTTTTTCGGTCa > 1:191386/1‑90 (MQ=255) aCTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAAAAATTAAGCCATCGCCGATAAACAAATTTTTTTTTTTCTGTCAGGCa > 1:335593/1‑90 (MQ=255) cTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTAAGCCATCGCCGATAGACAGATTTCATTTTTACGGTCAGGCAc < 2:130501/90‑1 (MQ=255) tgtgtgTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATAATTAAGCCATCGCCCGTAGAAAGATTTTATTTTTTCGGGCAGGCACCt > 1:283755/1‑90 (MQ=255) tgtgtgTATCTTTCCGCCCTCAAATTATTACGGCGGTAAAAGATTAAACCATCCCCCATAGACAAAATTTATTTTTTCGGTCAGGGACCt > 1:182705/1‑90 (MQ=255) tgtgtATCTTTCCGCCCTCAAATTATTACGGCGGTAAAAGATTAAACCATCGCCCATAGACAGATTTTATTTTTTCGGTCAGGGACCTTc > 1:37185/1‑90 (MQ=255) gtgtATCTTTCCGCCCTCAAATTATTACGGCGGTAAAAGATTAAGCCATCGCCCATAGACAGATTTCATTTTTTCGGGCAGGGACCTTcc > 2:256525/1‑90 (MQ=255) aTCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTAAGCCATCGCCCATAGACAGAATTTTTTTTTTCGGTCAGGCACCTTCCCggg > 1:347084/1‑90 (MQ=255) aaaTTATTACGGCGGTAAATGATTAAGCCATCGCCGATAGACAGATTTCATTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTaaa < 1:256525/90‑1 (MQ=255) taCGGCGGTAAAAGATTAAACCATCCCCGATAGACAAATTTTATTTTTTCGGTCAGGCACCTTCCCCGGCTGAACTGGCTAAAAACTGaa > 1:341828/1‑90 (MQ=255) tCGCCGATAGACAGATTTCATTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCa < 1:122413/84‑1 (MQ=255) tCGCCGATAGACAGATTTCATTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCa > 2:122413/1‑84 (MQ=255) aGATTTCATTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAAc < 1:69336/90‑1 (MQ=255) aGATTTCATTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAAc < 2:341828/90‑1 (MQ=255) | ACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTAAGCCATCGCCGATAGACAGATTTCATTTTTACGGTCAGGCACCTTCCCGGGCTGAACTGGCTAAAAGCTGAATTATTTGCATTCCTCCAGGAGAAATAGATGGAAAC > NZ_CP009273/2921425‑2921595 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |