| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 29 (0.590) | 14/166 | 1.2 | 100% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 0 (0.000) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
GCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1391406‑1391494‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTA > NZ_CP009273/1972747‑1972820 GCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 2:693742/90‑1GCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 2:623459/90‑1GCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 2:536339/90‑1GCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 2:472449/90‑1GCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 2:309353/90‑1GCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 2:1432645/90‑1GCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 2:1174555/90‑1GCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 1:581026/90‑1 CATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC < 2:636691/90‑1 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCTCACCTTCCTT < 2:1216688/90‑1 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTT < 1:997900/90‑1 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTT > 2:997900/1‑90 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTT > 1:666520/1‑90 ATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTT < 1:1408259/90‑1 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTA > 2:411392/1‑90 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTA > 2:1204784/1‑90 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTT < 2:951268/89‑1 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTT > 1:951268/1‑89 TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAA > 1:1180314/1‑90 GGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACATA < 2:850448/90‑1 GGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACATA < 2:322816/90‑1 GGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACATAA < 1:873743/90‑1 GGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACATAA < 1:1330830/90‑1 GAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACATAAA < 1:437379/90‑1 GAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACATAAA < 2:450918/90‑1 AGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACATAAAT > 1:304148/1‑90 AAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACATAAATGTAT < 1:71934/90‑1 GCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACATAAATGTATAAGTCAT < 1:890604/90‑1 GAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACATAAATGTATAAGTCATACTTTTGTTT > 1:187795/1‑90 TG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGT > 1:646056/1‑90 TG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTG < 2:1295534/89‑1 TG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTG > 1:1295534/1‑89 GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCA > 1:389583/1‑90 GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCA > 2:1381384/1‑90 TGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATC < 1:411392/90‑1 AGTCAGCCGAGAAGAATTTCCCCTCTTATTCGCACCTTCCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTG > 1:283982/1‑90 TTTCCCCGCTTATTCGCACCTTCCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGC < 1:1406299/90‑1 GCTTATTCGCACCTTCCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTA > 1:711342/1‑90 GCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATG‑AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1391406‑1391494‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTA > NZ_CP009273/1972747‑1972820 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |