| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 93 (1.870) | 39/168 | 0.1 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
GCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360019‑360193 | gCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTc > 2:123477/1‑90 (MQ=255)gCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTc > 1:559331/1‑90 (MQ=255)gCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTc > 1:558445/1‑90 (MQ=255)gCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTc > 1:15580/1‑90 (MQ=255) tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 2:96666/1‑90 (MQ=255) tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 1:488404/1‑90 (MQ=255) tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 1:403090/1‑90 (MQ=255) gCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg < 2:82587/90‑1 (MQ=255) gCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg < 2:820217/90‑1 (MQ=255) gCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt > 2:35552/1‑90 (MQ=255) tACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATgg > 2:576220/1‑90 (MQ=255) aTCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcggg < 2:1055606/90‑1 (MQ=255) aTCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcggg > 2:465090/1‑90 (MQ=255) aTCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTCTATggcggg < 1:1029563/90‑1 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc > 1:1219877/1‑75 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGc < 2:1219877/75‑1 (MQ=255) cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggggg > 1:1400457/1‑87 (MQ=255) cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggggg > 2:1374365/1‑87 (MQ=255) cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGt > 2:908164/1‑90 (MQ=255) cAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGt > 1:832682/1‑90 (MQ=255) ccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGgcc‑cg‑cccc > 2:448029/1‑89 (MQ=255) tCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCa < 2:164260/90‑1 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCAc < 2:14230/90‑1 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGGC‑TG‑ccccccccccc > 1:569149/1‑89 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCC‑TG‑CCCGccccccc > 2:260166/1‑89 (MQ=39) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCC‑CG‑ccccccccccc > 2:1096110/1‑89 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCAACCTcc < 2:209923/90‑1 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGTGC‑GG‑GCCGCCCCCCCCCcgg > 2:465000/1‑90 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCC‑TG‑CCCCCCCCCCCCCcgg > 2:1345729/1‑90 (MQ=38) gCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGCCC‑CG‑CCCCCCCCCCCCCccgccg > 2:1151327/1‑90 (MQ=255) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGt < 1:96666/90‑1 (MQ=255) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGt < 1:123477/90‑1 (MQ=255) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGt < 2:684706/90‑1 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCC‑TT‑CCCCCCCCCCCCCCGGCCgct > 2:865637/1‑88 (MQ=37) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCC‑TG‑CCCCCCCCCCCCCccgccgct > 1:617552/1‑88 (MQ=37) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGtt < 1:994359/90‑1 (MQ=255) tCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCC‑CGCCCCCCCCCCCCCCGGGCCGt > 2:464300/1‑90 (MQ=37) gatgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGCC‑CG‑CCCCCCCCCCCCCCGGCCGCTggt > 1:80134/1‑88 (MQ=37) aaGCTGTCAAACCTGAGACTCCCGATCCCCAATCCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCGCCCTCCGGGCCGTTGCTTCGCaa < 1:894020/90‑1 (MQ=18) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCaa < 2:832682/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCaa < 2:169397/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGACCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCaa < 1:1079924/90‑1 (MQ=255) cATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc < 1:1152201/90‑1 (MQ=255) aTGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcggg > 1:647228/1‑41 (MQ=255) aTGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcggg < 2:647228/41‑1 (MQ=255) tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCC‑CG‑CCCCCCCCCCCCCCGGCCGCTGCTTCCCCACCGTCAAAAcccc > 1:90009/1‑88 (MQ=16) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTc < 1:1096110/90‑1 (MQ=255) tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGGCC‑TG‑CCCCCCCCCCCCCCCGCCGTTTCTTCCCAAAGTTCAAAACCCCTCCccgc > 2:1369360/1‑90 (MQ=12) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:919822/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 2:441212/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:1360402/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 2:90009/90‑1 (MQ=255) tCCCCAATTCCTGGCAGTTTATGGCGGGCGCCC‑TG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAtt < 1:686249/90‑1 (MQ=255) ccAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGt < 2:881413/90‑1 (MQ=38) ccAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGt < 2:617552/90‑1 (MQ=38) aaTTCCTTGGAGTTTTTGGGGGGGGTCCTTC‑CCCGCCCCCCCCCGGGCCGTTGCTTCGCAACGTTC‑AATCCGCTCCCGGCGGATTTGTcc < 1:822560/90‑1 (MQ=2) aaTTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:1300400/90‑1 (MQ=25) aaTTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCCCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:1141786/90‑1 (MQ=25) aaTTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:1056447/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:559331/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:1374365/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:448029/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:147829/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:1255079/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:988336/90‑1 (MQ=35) | GCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCC‑TG‑CCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360019‑360193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |