| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,819,318 | 0 | G | A | 54.5% | ‑0.0 / 10.8 | 11 | intergenic (‑124/+79) | ves/spy | environmental stress‑induced protein Ves/ATP‑independent periplasmic protein‑refolding chaperone Spy |
| Reads supporting (aligned to +/- strand): ref base G (4/1); new base A (0/6); total (4/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.52e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.05e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTTG‑AGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAG > NZ_CP009273/1819242‑1819395 | ggATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTTG‑AGAAGAGAAAAGAAAACCGCCGATc > 2:397375/1‑90 (MQ=255) ggCAACTCGGGTGATTTACGTTAGTGGTGATCAGGTTTTTTTTACAACTGTTTG‑AGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGc < 1:77923/90‑1 (MQ=255) aaCTCGGGTGATTTCCGTTAGTGGTGATCAGGTTTTTTTTACACCTGTTTG‑AGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCAtt < 1:247925/90‑1 (MQ=255) aCTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTTG‑AGAAGAGAAAAG‑AAACCGCCGGTCCCTTCCAACCCATTAc > 1:336400/1‑90 (MQ=255) ttgttttACGTTGGTGGAGA‑CCGGTTTTTTTTTCCACTTTTTGAAAAAGAAAAAAAAAACCCGCCGATCCTGTCCACCGCATTACTGCaa < 2:486130/86‑1 (MQ=255) ttACGTTAGTGGTGATCAGGTTTTTTTTACAATTTTTTA‑AGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAg < 1:297713/90‑1 (MQ=255) tAGTGGTGATCAGGTTTTTTTTACAACTGTTTG‑AGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACa < 1:150056/90‑1 (MQ=255) gATCAGGCTTTTTTTACAACTGTTTG‑AGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcgg > 1:379106/1‑90 (MQ=255) gATCAGGCTTTTTTTACAACTGTTTG‑AGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcgg > 1:421866/1‑90 (MQ=255) aTCAGGTTTTTTTTACAACTGTTTG‑AGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcggc < 1:145355/90‑1 (MQ=255) gaaaagaaaaAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAg < 1:205147/87‑1 (MQ=255) | GGATGGTTATCGGCAACTCGGGTGATTTACGTTAGTGGTGATCAGGCTTTTTTTACAACTGTTTG‑AGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAG > NZ_CP009273/1819242‑1819395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |