| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,263,024 | (A)6→5 | coding (692/714 nt) | lpxT → | Kdo(2)‑lipid A phosphotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,263,019 | 0 | A | . | 100.0% | 52.3 / NA | 13 | coding (687/714 nt) | lpxT | Kdo(2)‑lipid A phosphotransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (5/8); total (5/8) | |||||||||||
CCGTGATATTGATCGGTTTGCCCTGGGTGTTGCTGACGCCATTAAGTGATCGATTAATCACCTTTTTTGACAAATCACTACCAGGAAAAAACAAACATTTCCAAAACAAATAACTCACAGTAATTAACATCATCAGGGTTATTTTTATAGTGAGGATAATCCTGATGA > NZ_CP009273/2262934‑2263101 | ccGTGATATTGATCGGTTTGCCCTGGGTGTTGCTGACGCCATTAAGTGATCGATTAATCACCTTTTTTGACAAATCACTACCAGGaaaaa > 2:35324/1‑90 (MQ=255) tatTGATCGGTTTGCCCTGGGTGTTGCTGACGCCATTAAGTGATCGATTAATCACCTTTTTTGACAAATCACTACCAGG‑AAAaacaaaca < 2:283197/90‑1 (MQ=255) gTTTGCCCTGGGTGTTGCTGACGCCATTAAGTGATCGATTAATCACCTTTTTTGACAAATCACTACCAGG‑AAAAACAAACATTTCCaaaa < 1:340175/90‑1 (MQ=255) cccTGGGTGTTGCTGACGCCATTAAGTGATCGATTAATCACCTTTTTTGACAAATCACTACCAGG‑AAAAACAAACATTTCCAAAACAAAt > 1:28430/1‑90 (MQ=255) gggTGTTGCTGACGCCATTAAGTGATCGATTAATCACCTTTTTTGACAAATCACTACCAGG‑AAAAACAAACATTTCCAAAACAAATAACt > 2:225835/1‑90 (MQ=255) tgtTGCTGACGCCATTAAGTGATCGATTAATCACCTTTTTTGACAAATCACTACCAGG‑AAAAACAAACATTTCCAAAACAAATAACTcac < 2:308265/90‑1 (MQ=255) tgtTGCTGACGCCATTAAGTGATCGATTAATCACCTTTTTTGACAAATCACTACCAGG‑AAAAACAAACATTTCCAAAACAAATAACTcac < 2:324690/90‑1 (MQ=255) aTCGATTAATCACCTTTTTTGACAAATCACTACCAGG‑AAAAACAAACATTTCCAAAACAAATAACTCACAGTAATTAACATCATCAGGGt > 2:38876/1‑90 (MQ=255) cTTTTTTGACAAATCACTACCAGG‑AAAAACAAACATTTCCAAAACAAATAACTCACAGTAATTAACATCATCAGGGTTATTTTTATAGTg < 1:225835/90‑1 (MQ=255) cTTTTTTGACAAATCACTACCAGG‑AAAAACAAACATTTCCAAAACAAATAACTCACAGTAATTAACATCATCAGGGTTATTTTTATAGTg < 1:510477/90‑1 (MQ=255) cTTTTTTGACAAATCACTACCAGG‑AAAAACAAACATTTCCAAAACAAATAACTCACAGTAATTAACATCATCAGGGTTATTTTTATAGTg < 2:259350/90‑1 (MQ=255) ttttttGACAAATCACTACCAGG‑AAAAACAAACATTTCCAAAACAAATAACTCACAGTAATTAACATCATCAGGGTTATTTTTATAGTGa > 1:344022/1‑90 (MQ=255) tGACAAATCACTACCAGG‑AAAAACAAACATTTCCAAAACAAATAACTCACAGTAATTAACATCATCAGGGTTATTTTTATAGTGAGGATa < 2:323617/90‑1 (MQ=255) cTACCAGG‑AAAAACAAACATTTCCAAAACAAATAACTCACAGTAATTAACATCATCAGGGTTATTTTTATAGTGAGGATAATCCtgatga > 1:15418/1‑90 (MQ=255) | CCGTGATATTGATCGGTTTGCCCTGGGTGTTGCTGACGCCATTAAGTGATCGATTAATCACCTTTTTTGACAAATCACTACCAGGAAAAAACAAACATTTCCAAAACAAATAACTCACAGTAATTAACATCATCAGGGTTATTTTTATAGTGAGGATAATCCTGATGA > NZ_CP009273/2262934‑2263101 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |