| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 235,808 | Δ1 bp | pseudogene (222/279 nt) | BW25113_RS25420 → | ISAs1 family transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 235,805 | 0 | A | . | 100.0% | 62.8 / NA | 17 | pseudogene (219/279 nt) | BW25113_RS25420 | ISAs1 family transposase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (10/7); total (10/7) | |||||||||||
AATTATTTTCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGAGAAGGTATTCAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATACCCCGACTCTCCCCGT > NZ_CP009273/235720‑235886 | aaTTATTTTCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGAGAAGGTATTCAAGGCAGGGTTAAGACGTAAGATGCGaaagc < 2:120501/90‑3 (MQ=18) cAGGGATACGGCACATTGCTATTAATATTTTGACGAATGAGAAGGTATTCAAGGCAGGGTTAAGACGTAAGATGCG‑AAAGCAGCCATGGa > 2:484695/1‑90 (MQ=16) gggATACGGCACATTGCTATTAATATTTTGACGAATGAGAAGGTATTCAAGGCAGGGTTAAGACGTAAGATGCG‑AAAGCAGCCATGGACa < 1:16815/90‑1 (MQ=255) acaTTGCTATTAATATTTTGACGAATGAGAAGGTATTCAAGGCAGGGTTAAGACGTAAGATGCG‑AAAGCAGCCATGGACAGAAACTACCt < 2:462766/90‑1 (MQ=16) ttttGACGAATGAGAAGGTATTCAAGGCAGGGTTAAGACGTAAGATGCG‑AAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGc > 1:43764/1‑90 (MQ=255) ttttGACGAATGAGAAGGTATTCAAGGCAGGGTTAAGACGTAAGATGCG‑AAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGc > 2:333084/1‑90 (MQ=255) aTGAGAAGGTATTCAAGGCAGGGTTAAGACGTAAGATGCG‑AAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCgg < 2:84068/90‑1 (MQ=255) aGGTATTCAAGGCAGGGTTAAGACGTAAGATGCG‑AAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTc < 2:51325/90‑1 (MQ=16) tCAAGGCAGGGTTAAGACGTAAGATGCG‑AAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCgtagta > 1:218005/1‑90 (MQ=255) tCAAGGCAGGGTTAAGACGTAAGATGCG‑AAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCgtagta < 2:43764/90‑1 (MQ=255) cAGGGTTAAGACGTAAGATGCG‑AAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAAt > 1:186236/1‑86 (MQ=255) cAGGGTTAAGACGTAAGATGCG‑AAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAAt < 2:186236/86‑1 (MQ=255) cAGGGTTAAGACGTAAGATGCG‑AAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATAccc > 1:101437/1‑90 (MQ=255) gggTTAAGACGTAAGATGCG‑AAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATACCCCg > 1:332246/1‑90 (MQ=255) gTAAGATGCG‑AAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATACCCCGACTCTCCCCg > 1:268610/1‑90 (MQ=255) gTAAGATGCG‑AAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATACCCCGACTCTCCCCg > 1:489378/1‑90 (MQ=255) tAAGATGCG‑AAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATACCCCGACTCTCCCCGt < 1:30081/90‑1 (MQ=255) tAAGATGCG‑AAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATACCCCGACTCTCCCCGt > 2:30081/1‑90 (MQ=255) | AATTATTTTCAGGGATACGGCACATTGCTATTAATATTTTGACGAATGAGAAGGTATTCAAGGCAGGGTTAAGACGTAAGATGCGAAAAGCAGCCATGGACAGAAACTACCTGGCGTCAGTCCTTGCGGGGAGCGGGCTTTCGTAGTAATACCCCGACTCTCCCCGT > NZ_CP009273/235720‑235886 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |