| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,435,568 | Δ1 bp | coding (326/2007 nt) | mnmC → | bifunctional tRNA (5‑methylaminomethyl‑2‑thiouridine)(34)‑methyltransferase MnmD/FAD‑dependent 5‑carboxymethylaminomethyl‑2‑thiouridine(34) oxidoreductase MnmC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,435,568 | 0 | A | . | 100.0% | 65.2 / NA | 16 | coding (326/2007 nt) | mnmC | bifunctional tRNA (5‑methylaminomethyl‑2‑thiouridine)(34)‑methyltransferase MnmD/FAD‑dependent 5‑carboxymethylaminomethyl‑2‑thiouridine(34) oxidoreductase MnmC |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (9/7); total (9/7) | |||||||||||
TTGATCAGTTTCGCGAAGCGCATCCGCAAGCGCAATTACAACGCTTACATTTCATTAGTTTTGAGAAATTTCCCCTCACCCGTGCGGATTTAGCCTTAGCGCATCAACACTGGCCGGAACTGGCTCCGTGGGCAGAACAACTTCAGGCGCAGTGGCCAATGCCCT > NZ_CP009273/2435481‑2435645 | ttGATCAGTTTCGCGAAGCGCATCCGCAAGCGCAATTACAACGCTTACATTTCATTAGTTTTGAGAAATTTCCCCTCACCCGTGCGGttt < 1:239836/90‑1 (MQ=255) aGTTTCGCGAAGCGCATCCGCAAGCGCAATTACAACGCTTACATTTCATTAGTTTTGAGAAATTTCCCCTCACCCGTGCGG‑TTTAGCCtt > 1:338662/1‑90 (MQ=255) gcgAAGCGCATCCGCAAGCGCAATTACAACGCTTACATTTCATTAGTTTTGAGAAATTTCCCCTCACCCGTGCGG‑TTTAGCCTTAgc < 1:269112/87‑1 (MQ=255) gcgAAGCGCATCCGCAAGCGCAATTACAACGCTTACATTTCATTAGTTTTGAGAAATTTCCCCTCACCCGTGCGG‑TTTAGCCTTAgc > 2:269112/1‑87 (MQ=255) gcgcATCCGCAAGCGCAATTACAACGCTTACATTTCATTAGTTTTGAGAAATTTCCCCTCACCCGTGCGG‑TTTAGCCTTAGCGCATCAac > 2:50246/1‑90 (MQ=255) gcgcATCCGCAAGCGCAATTACAACGCTTACATTTCATTAGTTTTGAGAAATTTCCCCTCACCCGTGCGG‑TTTAGCCTTAGCGCATCAac > 2:141220/1‑90 (MQ=255) gcgcATCCGCAAGCGCAATTACAACGCTTACATTTCATTAGTTTTGAGAAATTTCCCCTCACCCGTGCGG‑TTTAGCCTTAGCGCATCAac > 2:242188/1‑90 (MQ=255) gcATCCGCAAGCGCAATTACAACGCTTACATTTCATTAGTTTTGAGAAATTTCCCCTCACCCGTGCGG‑TTTAGCCTTAGCGCATCAacac < 1:242188/90‑1 (MQ=255) gCAAGCGCAATTACAACGCTTACATTTCATTAGTTTTGAGAAATTTCCCCTCACCCGTGCGG‑TTTAGCCTTAGCGCATCAACACTGGCCg < 2:432428/90‑1 (MQ=255) aaGCGCAATTACAACGCTTACATTTCATTAGTTTTGAGAAATTTCCCCTCACCCGTGCGG‑TTTAGCCTTAGCGCATCAACACTGGCCGGa > 1:163422/1‑90 (MQ=255) gCTTACATTTCATTAGTTTTGAGAAATTTCCCCTCACCCGTGCGG‑TTTAGCCTTAGCGCATCAACACTGGCCGGAACTGGCTCCGTGGGc > 1:473677/1‑90 (MQ=255) cATTTCATTAGTTTTGAGAAATTTCCCCTCACCCGTGCGG‑TTTAGCCTTAGCGCATCAACACTGGCCGGAACTGGCTCCGTGGGCAGaac < 1:38821/90‑1 (MQ=255) cATTAGTTTTGAGAAATTTCCCCTCACCCGTGCGG‑TTTAGCCTTAGCGCATCAACACTGGCCGGAACTGGCTCCGTGGGCAGAACAACtt > 2:98161/1‑90 (MQ=255) tttCCCCTCACCCGTGCGG‑TTTAGCCTTAGCGCATCAACACTGGCCGGAACTGGCTCCGTGGGCAGAACAACTTCAGGCGCAGTGGCCaa < 2:338662/90‑1 (MQ=255) ttCCCCTCACCCGTGCGG‑TTTAGCCTTAGCGCATCAACACTGGCCGGAACTGGCTCCGTGGGCAGAACAACTTCAGGCGCAGTGGCCAAt < 1:459307/90‑1 (MQ=255) ttCCCCTCACCCGTGCGG‑TTTAGCCTTAGCGCATCAACACTGGCCGGAACTGGCTCCGTGGGCAGAACAACTTCAGGCGCAGTGGCCAAt < 1:141220/90‑1 (MQ=255) cTCACCCGTGCGG‑TTTAGCCTTAGCGCATCAACACTGGCCGGAACTGGCTCCGTGGGCAGAACAACTTCAGGCGCAGTGGCCAATGCCCt > 1:428623/1‑90 (MQ=255) | TTGATCAGTTTCGCGAAGCGCATCCGCAAGCGCAATTACAACGCTTACATTTCATTAGTTTTGAGAAATTTCCCCTCACCCGTGCGGATTTAGCCTTAGCGCATCAACACTGGCCGGAACTGGCTCCGTGGGCAGAACAACTTCAGGCGCAGTGGCCAATGCCCT > NZ_CP009273/2435481‑2435645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |