| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,091,711 | (G)5→4 | coding (94/984 nt) | kdgT → | 2‑keto‑3‑deoxygluconate transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,091,707 | 0 | G | . | 100.0% | 78.6 / NA | 19 | coding (90/984 nt) | kdgT | 2‑keto‑3‑deoxygluconate transporter |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (9/10); total (9/10) | |||||||||||
ATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATGATTACCGGTACGGTGCCCATTCTGGCGGTGTGGTTTTTTTGCA > NZ_CP009273/4091618‑4091789 | aTGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCg > 2:53539/1‑90 (MQ=255)aTGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCg > 2:346237/1‑90 (MQ=255)aTGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCg > 2:345442/1‑90 (MQ=255) aCGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCC‑GGGGCGGGGaaa < 2:63687/90‑1 (MQ=255) aCGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCC‑GGGGCGGGGaaa < 1:53539/90‑1 (MQ=255) aCGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCC‑GGGGCGGGGaaa < 2:136971/90‑1 (MQ=255) tCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCC‑GGGGCGGGGaaa > 1:443452/1‑86 (MQ=255) tCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCC‑GGGGCGGGGaaa < 2:443452/86‑1 (MQ=255) gATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCC‑GGGGCGGGGAAATAtttt > 1:83496/1‑90 (MQ=255) gagaAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCC‑GGGGCGGGGAAATATTTTGGAt < 2:464329/90‑1 (MQ=255) aTCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCC‑GGGGCGGGGAAATATTTTGGATCATTCa > 2:211637/1‑90 (MQ=255) ccGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCC‑GGGGCGGGGAAATATTTTGGATCATTCACCa < 1:304962/90‑1 (MQ=255) atgatgCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCC‑GGGGCGGGGAAATATTTTGGATCATTCACCAACGGgatga < 2:90360/90‑1 (MQ=255) gatgCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCC‑GGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATGAtt < 1:211637/90‑1 (MQ=255) atgCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCC‑GGGGCGGGGGAATATTTTTGGTCATTCACCAACGGGATGATTa > 2:374793/1‑90 (MQ=255) gCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCC‑GGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATGATTAcc < 1:51332/90‑1 (MQ=255) cccGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCggggc < 2:119099/44‑2 (MQ=255) cccGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCggggc > 1:119099/1‑43 (MQ=255) cTGTGCCACACCTTCTCGCC‑GGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATGATTACCGGTACGGTGCCCATTCTGGCGgtgt > 1:409674/1‑90 (MQ=255) acacCTTCTCGCC‑GGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATGATTACCGGTACGGTGCCCATTCTGGCGGTGTGGttttt > 1:209265/1‑90 (MQ=255) ccTTCTCGCC‑GGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATGATTACCGGTACGGGGCCCATTCTGGCGGTGTGGTTTTTTTg > 2:314229/1‑90 (MQ=255) ttCTCGCC‑GGGGCGGGGAAATATTTTGGGTCATTCACCAACGGGATGATTACCGGTACGGTGccc > 1:522429/1‑65 (MQ=255) ttCTCGCC‑GGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATGATTACCGGTACGGTGccc < 2:522429/65‑1 (MQ=255) ttCTCGCC‑GGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATGATTACCGGTACGGTGCCCATTCTGGCGGGGTGGTTTTTTTGCa > 1:512732/1‑90 (MQ=255) | ATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACACCTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATGATTACCGGTACGGTGCCCATTCTGGCGGTGTGGTTTTTTTGCA > NZ_CP009273/4091618‑4091789 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |