Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NZ_CP009273	513,425	Δ1 bp	coding (311/855 nt)	cnoX ←	chaperedoxin

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	513,423	0	G	.	100.0%	27.2 / NA	8	coding (313/855 nt)	cnoX	chaperedoxin
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (4/4);  total (4/4)

TGCTTTCCTGCATCAGTTGCATCGCCTGCTGCGCTTTCAGCTCTTCTTCGCGCGGCAGCACTTTATCCAGCAGGGCGCGGATCGCCTCTTCCGGTTGCGGCCCCTGGAAGCCATCTACCGGTTGCCCGTTCTGGAACAGATACACGGTCGGAA  >  NZ_CP009273/513351‑513503                                                                         |                                                                                 tGCTTTCCTGCATCAGTTGCATCGCCTGCTGCGCTTTCAGCTCTTCTTCGCGCGGCAGCACTTTATCCAGCA‑GGCGCGGATCGCCTCTTc                                                                <  1:90669/90‑1 (MQ=255)    tttCCTGCATCAGTTGCATCGCCTGCTGCGCTTTCAGCTCTTCTTCGCGCGGCAGCACTTTATCCAGCA‑GGCGCGGATCGCCTCTTCCgg                                                             >  2:490363/1‑90 (MQ=255)        cTGCATCAGTTGCATCGCCTGCTGCGCTTTCAGCTCTTCTTCGCGCGGCAGCACTTTATCCAGCA‑GGCGCGGATCGCCTCTTCCGGTTGc                                                         <  2:512437/90‑1 (MQ=255)                  tGCATCGCCTGCTGCGCTTTCAGCTCTTCTTCGCGCGGCAGCAATTTATCCAGCA‑GGCGCGGATCGCCTCTTCCAGTTGCGGCCCCTGGa                                               <  2:446176/90‑1 (MQ=255)                        gCCTGCTGCGCTTTCAGCTCTTCTTCGCGCGGCAGCACTTTATCCAGCA‑GGCGCGGATCGCCTCTTCCGGTTGCGGCCCCTGGAAGCCAt                                         >  1:44452/1‑90 (MQ=255)                                             tcttcGCGCGGCAGCACTTTATCCAGCA‑GGCGCGGATCGCCTCTTCCGGTTGCGGCCCCTGGAAGCCATCTACCGGTTGCCCGTTCTGGa                    <  2:3598/90‑1 (MQ=255)                                                  gcgcgGCAGCACTTTATCCAGCA‑GGCGCGGATCGCCTCTTCCGGTTGCGGCCCCTGGAAGCCATCTACCGGTTGCCCGTTCTGGAACAGa               >  1:251293/1‑90 (MQ=255)                                                               ttATCCAGCA‑GGCGCGGATCGCCTCTTCCGGTTGCGGCCCCTGGAAGCCATCTACCGGTTGCCCGTTCTGGAACAGATACACGGTCGGaa  >  2:396007/1‑90 (MQ=255)                                                                         |                                                                                 TGCTTTCCTGCATCAGTTGCATCGCCTGCTGCGCTTTCAGCTCTTCTTCGCGCGGCAGCACTTTATCCAGCAGGGCGCGGATCGCCTCTTCCGGTTGCGGCCCCTGGAAGCCATCTACCGGTTGCCCGTTCTGGAACAGATACACGGTCGGAA  >  NZ_CP009273/513351‑513503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑