| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 541,549 | Δ1 bp | coding (271/1050 nt) | allD ← | ureidoglycolate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 541,546 | 0 | T | . | 100.0% | 38.2 / NA | 10 | coding (274/1050 nt) | allD | ureidoglycolate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (6/4); total (6/4) | |||||||||||
AGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCATTTTCGCCGCGACCTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAG > NZ_CP009273/541459‑541595 | agaTTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCAttt < 2:280409/90‑1 (MQ=255) gaTTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCAtttc > 2:102486/1‑89 (MQ=255) ttGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCAtttcgc > 2:26352/1‑87 (MQ=255) gcTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCA‑TTTCGCCGCGAcc < 1:291130/90‑1 (MQ=255) aTCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCA‑TTTCGCCGCGACCTGTCcggcgg > 2:500131/1‑90 (MQ=255) ccGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCA‑TTTCGCCGCGACCTGTCCGGCGGCATTGTCGGCAt < 2:453299/90‑1 (MQ=255) gACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCA‑TTTCGCCGCGACCTGTCCggcggc > 1:48310/1‑77 (MQ=255) gACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCA‑TTTCGCCGCGACCTGTCCggcggc < 2:48310/77‑1 (MQ=255) gACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCA‑TTTCGCCGCGACCTGCCCGGCGGCATTGTCGGCATGt > 2:207761/1‑90 (MQ=255) ccGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCA‑TTTCGCCGCGACCTGTCCGGCGGCATTGTCGGCATGTAAAAt > 2:339123/1‑90 (MQ=255) gCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCA‑TTTCGCCGCGACCTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAg > 2:215748/1‑90 (MQ=255) aTTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCA‑TTTcgccg > 1:70987/1‑46 (MQ=255) aTTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCA‑TTTcgccg < 2:70987/46‑1 (MQ=255) | AGATTGCGCCGCTGTGACCCATCCGGCTGATACCGACCACCGCAACGCCATTTTGCTGGGCGGTTTTGATGGCATGTTCCATACCCATTTTCGCCGCGACCTGTCCGGCGGCATTGTCGGCATGTAAAATTGCCGAG > NZ_CP009273/541459‑541595 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |