| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 559,561 | (A)6→5 | coding (376/633 nt) | fimZ ← | fimbria biosynthesis transcriptional regulator FimZ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 559,556 | 0 | A | . | 100.0% | 42.4 / NA | 11 | coding (381/633 nt) | fimZ | fimbria biosynthesis transcriptional regulator FimZ |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (8/3); total (8/3) | |||||||||||
GTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACC > NZ_CP009273/559470‑559633 | gTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGaaaa < 1:191718/90‑1 (MQ=255)gTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGaaaa > 2:191718/1‑90 (MQ=255) tCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGaaaaa > 1:451044/1‑90 (MQ=255) ttCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGaaaaacgtg > 2:521987/1‑86 (MQ=255) tAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGG‑AAAAACGTGTATCCGga < 1:521987/90‑1 (MQ=255) gTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGG‑AAAAACGTGTATCCGGAGAGGATCATCt > 1:245766/1‑90 (MQ=255) tGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGG‑AAAAACGTGTATCCGGAGAGGATCATCTg > 2:335/1‑90 (MQ=255) gTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGG‑AAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAatat < 1:34882/90‑1 (MQ=255) cATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGG‑AAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCt > 2:138163/1‑90 (MQ=255) tATTGCTTTTTATATAGTTAAGCGTTTCGCTGGG‑AAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATc > 2:260523/1‑90 (MQ=255) aaGCGTTTCGCTGGG‑AAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACaaaa > 2:77167/1‑90 (MQ=255) gCGTTTCGCTGGG‑AAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAAcc > 2:508006/1‑90 (MQ=255) gCGTTTCGCTGGG‑AAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAAcc > 2:88749/1‑90 (MQ=255) tCGCTGGG‑AAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGaaa < 1:67695/49‑1 (MQ=39) tCGCTGGG‑AAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGaaa > 2:67695/1‑49 (MQ=39) | GTCACTTCACGATTAGATAGCACAGTGACCGTTGAACTATTCGTACTACATTTATTGCTTTTTATATAGTTAAGCGTTTCGCTGGGAAAAAACGTGTATCCGGAGAGGATCATCTGAACGGCATGAAAAATATCATTCTGATCATTGCATTTACTGACAAAACC > NZ_CP009273/559470‑559633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |