| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 843,818 | Δ1 bp | intergenic (‑358/+46) | glnH ← / ← dps | glutamine ABC transporter substrate‑binding protein GlnH/DNA starvation/stationary phase protection protein Dps |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 843,817 | 0 | A | . | 100.0% | 52.0 / NA | 13 | intergenic (‑357/+47) | glnH/dps | glutamine ABC transporter substrate‑binding protein GlnH/DNA starvation/stationary phase protection protein Dps |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (6/7); total (6/7) | |||||||||||
TTTACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTAT > NZ_CP009273/843731‑843901 | tttACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGagcc < 2:400537/90‑4 (MQ=255) ttAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGagcc > 1:353676/1‑82 (MQ=255) ttAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGagcc < 2:353676/85‑4 (MQ=255) agaTAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGG‑AGCCGC‑TTTATCGGGTACTaa < 2:35236/90‑1 (MQ=255) gaTAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGG‑AGCCGCTTTTATCGGGTACTaa < 1:42303/90‑1 (MQ=255) gaTAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGG‑AGCCGCTTTTATCGGGTACTaa < 1:499745/90‑1 (MQ=255) gCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGG‑AGCCGCTTTTATCg > 1:82661/1‑78 (MQ=255) gCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGG‑AGCCGCTTTTATCg < 2:82661/78‑1 (MQ=255) gCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGG‑AGCCGCTTTTATCGGGTACTAAAGtt > 1:200976/1‑90 (MQ=255) gCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGagc > 2:210538/1‑55 (MQ=255) gCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGagc < 1:210538/57‑3 (MQ=255) cGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGG‑AGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTAt < 1:417617/90‑1 (MQ=255) ttGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGG‑AGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTc > 2:260641/1‑90 (MQ=255) ttGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGG‑AGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTc < 2:428137/90‑1 (MQ=255) aaacGGCCTCCTGTCAGG‑AGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAAcc > 1:376656/1‑90 (MQ=255) ggCCTCCTGTCAGG‑AGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAg < 1:449181/90‑1 (MQ=255) gCCTCCTGTCAGG‑AGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAgg > 2:270704/1‑90 (MQ=255) gTCAGG‑AGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTGGATAAACCACAGGAATTTAt > 1:494334/1‑90 (MQ=255) | TTTACTTAATCAGCTGGAGATAGCAGATGGATGCACTAAATAAGTGCGTTGAGGTGGGCTGCAAAACAAAACGGCCTCCTGTCAGGAAGCCGCTTTTATCGGGTACTAAAGTTCTGCACCATCAGCGATGGATTTATTCGATGTTAGACTCGATAAACCACAGGAATTTAT > NZ_CP009273/843731‑843901 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |