| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,632,977 | (A)8→7 | intergenic (‑53/+310) | cspI ← / ← rzpQ | cold shock protein CspI/DUF2514 domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,632,970 | 0 | A | . | 100.0% | 47.2 / NA | 12 | intergenic (‑46/+317) | cspI/rzpQ | cold shock protein CspI/DUF2514 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (8/4); total (8/4) | |||||||||||
GGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTGGGCAGAATGGTCCGAAAAAAAATATCAGAGAGAAAAACCAACAAGGAAATCTCAAGAGGTACAAATAATAAAATTATAACAATGACTGCTTCAGATAAAT > NZ_CP009273/1632884‑1633055 | gggTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTGGGCAGAATGGTCCGaaaa > 1:142688/1‑90 (MQ=255) cTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTGGGCAGAATGGTCCG‑AAAAAAATATCAGAGAGaaa > 1:102834/1‑90 (MQ=255) gTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTGGGCAGAATGGTCCG‑AAAAAAATATCAGAGAGAAAAACcaaca > 1:252727/1‑90 (MQ=255) aTTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTGGGCAGAATGGTCCG‑AAAAAAATATCAGAGAGAAAAACCAACAAgg < 1:443581/90‑1 (MQ=255) aCATAATTATTACCTTTTGAAGAAATTAGCCCTTGGGCAGAATGGTCCG‑AAAAAAATATCAGAGAGAAAAACCAACAAGGAAATCTCAag < 2:241304/90‑1 (MQ=255) cTTTTGAAGAAATTAGCCCTTGGGCAGAATGGTCCG‑AAAAAAATATCAGAGAGAAAAACCAACAAGGaaa > 1:474746/1‑70 (MQ=255) cTTTTGAAGAAATTAGCCCTTGGGCAGAATGGTCCG‑AAAAAAATATCAGAGAGAAAAACCAACAAGGaaa < 2:474746/70‑1 (MQ=255) cTTTTGAAGAAATTAGCCCTTGGGCAGAATGGTCCG‑AAAAAAATATCAGAGAGAAAAACCAACAAGGAAATCTCAAGAGGTACAaataat > 1:356413/1‑90 (MQ=255) cTTTTGAAGAAATTAGCCCTTGGGCAGAATGGTCCG‑AAAAAAATATCAGAGAGAAAAACCAACAAGGAAATCTCAAGAGGTACAaataat > 2:446379/1‑90 (MQ=255) ttttGAAGAAATTAGCCCTTGGGCAGAATGGTCCG‑AAAAAAATATCAGAGAGAAAAACCAACAAGGAAATCTCAAGAGGTACAAataata > 1:436085/1‑90 (MQ=255) ttttGAAGAAATTAGCCCTTGGGCAGAATGGTCCG‑AAAAAAATATCAGAGAGAAAAACCAACAAGGAAATCTCAAGAGGTACAAataata < 2:517331/90‑1 (MQ=255) gAATGGTCCG‑AAAAAAATATCAGAGAGAAAAACCAACAAGGAAATCTCAAGAGGTACAAATAATAAAATTATAACAATGACTGCTTCAGa > 2:97345/1‑90 (MQ=255) gTCCG‑AAAAAAATATCAGAGAGAAAAACCAACAAGGAAATCTCAAGAGGTACAAATAATAAAATTATAACAATGACTGCTTCAGATAAAt > 1:418611/1‑90 (MQ=255) | GGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTGGGCAGAATGGTCCGAAAAAAAATATCAGAGAGAAAAACCAACAAGGAAATCTCAAGAGGTACAAATAATAAAATTATAACAATGACTGCTTCAGATAAAT > NZ_CP009273/1632884‑1633055 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |