| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,482,400 | (G)6→7 | intergenic (‑58/+4) | idnT ← / ← idnO | gnt‑II system L‑idonate transporter/gluconate 5‑dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,482,394 | 1 | . | G | 100.0% | 53.7 / NA | 16 | intergenic (‑52/+10) | idnT/idnO | gnt‑II system L‑idonate transporter/gluconate 5‑dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (11/5); total (11/5) | |||||||||||
CAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑GGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAA > NZ_CP009273/4482307‑4482477 | cagcGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑gg > 2:83781/1‑90 (MQ=255) gcgACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑gggggg < 2:445191/90‑1 (MQ=255) aCGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑gggggggct < 1:24267/90‑4 (MQ=255) cGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑gggggggctg < 2:97289/90‑5 (MQ=255) ccGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTAGGGGGGGCTGTTAAAc < 2:461056/90‑1 (MQ=255) gATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTAGGGGGGGCTGTTAAACAGCCACTAAc > 1:77608/1‑90 (MQ=255) tAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTAGGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATc < 1:279670/90‑1 (MQ=255) tAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTAGGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATc < 2:505292/90‑1 (MQ=255) tATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTAGGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCaacaaac > 1:389971/1‑90 (MQ=255) ctctTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTAGGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAaacaac < 2:77608/90‑1 (MQ=255) ctTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTAGGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAg > 2:392404/1‑90 (MQ=255) ctTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTAGGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAg > 1:458829/1‑90 (MQ=255) gTGCCAGAAAAGCAGCGCTTTCGCGGGGCACGTAGGGGGGGCTCTTAAACAGCCACTAACATGCCGCCATCAACAAACAACGGGTGGcgg > 2:505033/1‑88 (MQ=255) ccAGAAAAGCAGCGCTTTCGCGCTGCACGTAGGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGttt > 2:366634/1‑90 (MQ=255) agcagcGCTTTCGCGCTGCACGTAGGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAAt > 2:329290/1‑90 (MQ=255) cgcTTTCGCGCTGCACGTAGGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCagag > 1:320540/1‑90 (MQ=255) gcTTTCGCGCTGCACGTAGGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAgg > 1:84959/1‑90 (MQ=255) gCACGTAGGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTgaagaa > 1:459357/1‑90 (MQ=255) gCACGTAGGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTgaagaa > 2:512502/1‑90 (MQ=255) cACGTAGGGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGaaa < 2:320540/90‑1 (MQ=255) | CAGCGCGACGCCTGCCGCAATAATGATTAATGGCATAGTCTTTATCTCTTATTAGTGCCAGAAAAGCAGCGCTTTCGCGCTGCACGTA‑GGGGGGCTGTTAAACAGCCACTAACATGCCGCCATCAACAAACAACAGGTGGCCGTTTACGAAATCAGAGGCTTTTGAAGAAA > NZ_CP009273/4482307‑4482477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |