| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,782,562 | (T)7→8 | intergenic (+27/‑130) | ppsR → / → aroH | posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR/3‑deoxy‑7‑phosphoheptulonate synthase AroH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,782,555 | 1 | . | T | 100.0% | 46.2 / NA | 13 | intergenic (+20/‑137) | ppsR/aroH | posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR/3‑deoxy‑7‑phosphoheptulonate synthase AroH |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (7/6); total (7/6) | |||||||||||
TTCGGTAGAAGAGATTGCCACCAAGATCCTCGATATCATGGGCCTTAGTCGCCGAATGTACTAGAGAACTAGTGCATTAGCTTA‑TTTTTTTGTTATCATGCTAACCACCCGGCGAGGTGTGACACACCTCGCACTTGAAATCAGCAGCGATTGGTT > NZ_CP009273/1782472‑1782627 | ttCGGTAGAAGAGATTGCCACCAAGATCCTCGATATCATGGGCCTTAGTCGCCGAATGTACTAGAGAACTAGTGCATTAGCTTA‑tttttt > 2:73513/1‑90 (MQ=255) gTAGAAGAGATTGCCACCAAGATCCTCGATATCATGGGCCTTAGTCGCCGAATGTACTAGAGAACTAGTGCATTAGCTTA‑ttttttttgt > 1:175430/1‑87 (MQ=255) gagaTTGCCACCAAGATCCTCGATATCATGGGCCTTAGTCGCCGAATGTACTAGAGAACTAGTGCATTAGCTTATTTTTTTTGTTATCAt < 1:119805/90‑1 (MQ=255) ttGCCACCAAGATCCTCGATATCATGGGCCTTAGTCGCCGAATGTACTAGAGAACTAGTGCATTAGCTTATTTTTTTTGTTATCATGCTa > 1:72682/1‑90 (MQ=255) ttGCCACCAAGATCCTCGATATCATGGGCCTTAGTCGCCGAATGTACTAGAGAACTAGTGCATTAGCTTATTTTTTTTGTTATCATGCTa > 2:90931/1‑90 (MQ=255) tCCTCGATATCATGGGCCTTAGTCGCCGAATGTACTAGAGAACTAGTGCATTAGCTTATTTTTTTTGTTATCATGCTAACCACCCGGCGa < 1:341339/90‑1 (MQ=255) cTCGATATCATGGGCCTTAGTCGCCGAATGTACTAGAGAACTAGTGCATTAGCTTATTTTTTTTGTTATCATGCTAACCACCCGGCGAgg < 2:441232/90‑1 (MQ=255) ttAGTCGCCGAATGTACTAGAGAACTAGTGCATTAGCTTATTTTTTTTGTTATCATGCTAACCACCCGGCGAGGTGTGACACACCTCGCa > 1:197361/1‑90 (MQ=255) tAGTCGCTGAATGTACTAGAGAACTAGTGCATTAGCTTATTTTTTTTGTTATCATGCTAACCACCCGGCGAGGTGTGACACACCTCGCAc > 1:302248/1‑90 (MQ=255) tAGTCGCCGAATGTACTAGAGAACTAGTGCATTAGCTTATTTTTTTTGTTATCATGCTAACCACCCGGCGAGGTGTGACACACCTCGCAc > 1:354219/1‑90 (MQ=255) tAGTCGCCGAATGTACTAGAGAACTAGTGCATTAGCTTATTTTTTTTGTTATCATGCTAACCACCCGGCGAGGTGTGACACACCTCGCAc > 1:437682/1‑90 (MQ=255) tGTACTAGAGAACTAGTGCATTAGCTTATTTTTTTTGTTATCATGCTAACCACCCGGCGAGGTGTGACACACCTCGCACTTGAAATcagc < 2:302248/90‑1 (MQ=255) gagaACTAGTGCATTAGCTTATTTTTTTTGTTATCATGCTAACCACCCGGCGAGGTGTGACACACCTCGCACTTGAAATCAGCAGCGAtt < 2:92940/90‑1 (MQ=255) gaACTAGTGCATTAGCTTATTTTTTTTGTTATCATGCTAACCACCCGGCGAGGTGTGACACACCTCGCACTTGAAATCAGCAGCGATTgg > 1:165528/1‑90 (MQ=255) aCTAGTGCATTAGCTTATTTTTTTTGTTATCATGCTAACCACCCGGCGAGGTGTGACACACCTCGCACTTGAAATCAGCAGCGATTGGtt < 1:90931/90‑1 (MQ=255) | TTCGGTAGAAGAGATTGCCACCAAGATCCTCGATATCATGGGCCTTAGTCGCCGAATGTACTAGAGAACTAGTGCATTAGCTTA‑TTTTTTTGTTATCATGCTAACCACCCGGCGAGGTGTGACACACCTCGCACTTGAAATCAGCAGCGATTGGTT > NZ_CP009273/1782472‑1782627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |