| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,889,775 | C→T | R238R (CGC→CGT) | pabB → | aminodeoxychorismate synthase component 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,889,775 | 0 | C | T | 100.0% | 69.3 / NA | 19 | R238R (CGC→CGT) | pabB | aminodeoxychorismate synthase component 1 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (8/11); total (8/11) | |||||||||||
GTGAATCTCGCCCAAC‑GTTTTCATGCGACCTATTCTGGCGATGAATGGCAGGCATTCCTTCAGCTTAATCAGGCCAACCGCGCGCCATTTAGCGCTTTTTTACGTCTTGAACAGGGTGCAATTTTAAGCCTTTCGCCAGAGCGGTTTATTCTTTGTGATAATAGTGA > NZ_CP009273/1889695‑1889861 | gTGAATCTCGCCCAAC‑GTTTTCATGCGACCTATTCTGGCGATGAATGGCAGGCATTCCTTCAGCTTAATCAGGCCAACCGTGCGCCAttt > 2:70049/1‑90 (MQ=255)gTGAATCTCGCCCAAC‑GTTCTCATGCGACCTATTCTGGCGATGAATGGCAGGCATTCCTTCAGCTTAATCAGGCCAACCGTGCGCCAttt > 2:155720/1‑90 (MQ=255) gAATCTCGCCCAACGGTTTTCATGCGACCTATTCTGGCGATGAATGGCAGGCATTCCTTCAGCTTAATCAGGCCAACCGTGCGCCATTTa > 2:442646/1‑90 (MQ=255) tctcGCCCAAC‑GTTTTCATGCGACCTATTCTGGCGATGAATGGCAGGCATTCCTTCAGCTTAATCAGGCCAACCGTGCGCCATTTAgcgc < 2:79018/90‑1 (MQ=255) cAAC‑GTTTTCATGCGACCTATTCTGGCGATGAATGGCAGGCATTCCTTCAGCTTAATCAGGCCAACCGTGCGCCATTTAGCGCTTTTTTa < 1:15414/90‑1 (MQ=255) cAAC‑GTTTTCATGCGACCTATTCTGGCGATGAATGGCAGGCATTCCTTCAGCTTAATCAGGCCAACCGTGCGCCATTTAGCGCTTTTTTa < 1:70049/90‑1 (MQ=255) aC‑GTTTTCATGCGACCTATTCTGGCGATGAATGGCAGGCATTCCTTCAGCTTAATCAGGCCAACCGTGCGCCATTTAGCGCTTTTTTACg < 1:256861/90‑1 (MQ=255) cggTTTTCATGCGACCTATTCTGGCGATGAATGGCAGGCATTCCTTCAGCTTAATCAGGCCAACCGTGCGCCATTTAGCGCTTTTTTACg < 1:442646/88‑1 (MQ=255) tttCATGCGACCTATTCTGGCGATGAATGGCAGGCATTCCTTCAGCTTAATCAGGCCAACCGTGCGCCATTTAGCGCTTTTTTACGTCtt > 1:145910/1‑90 (MQ=255) gCGACCTATTCTGGCGATGAATGGCAGGCATTCCTTCAGCTTAATCAGGCCAACCGTGCGCCATTTAGCGCTTTTTTACGTCTTGAACAg > 2:438791/1‑90 (MQ=255) tATTCTGGCGATGAATGGCAGGCATTCCTTCAGCTTAATCAGGCCAACCGTGCGCCATTTAGCGCTTTTTTACGTCTTGAACAGGGTGCa < 2:493754/90‑1 (MQ=255) gCGATGAATGGCAGGCATTCCTTCAGCTTAATCAGGCCAACCGTGCGCCATTTAGCGCTTTTTTACGTCt > 1:325628/1‑70 (MQ=255) gCGATGAATGGCAGGCATTCCTTCAGCTTAATCAGGCCAACCGTGCGCCATTTAGCGCTTTTTTACGTCt < 2:325628/70‑1 (MQ=255) tGAATGGCAGGCATTCCTTCAGCTTAATCAGGCCAACCGTGCGCCATTTAGCGCTTTTTTACGTCTTGAACAGGGTGCAATTTTAAGCCt > 1:338609/1‑90 (MQ=255) gcaTTCCTTCAGCTTAATCAGGCCAACCGTGCGCCATTTAGCGCTTTTTTACGTCTTGAACAGGGTGCAATTTTAAGCCTTTCGCCagag < 1:31882/90‑1 (MQ=255) gcaTTCCTTCAGCTTAATCAGGCCAACCGTGCGCCATTTAGCGCTTTTTTACGTCTTGAACAGGGTGCAATTTTAAGCCTTTCGCCagag < 1:155720/90‑1 (MQ=255) aaTCAGGCCAACCGTGCGCCATTTAGCGCTTTTTTACGTCTTGAACAGGGTGCAATTTTAAGCCTTTCGCCAGAGCGGTTTATTCTTtgt > 1:409301/1‑90 (MQ=255) gCCAACCGTGCGCCATTTAGCGCTTTTTTACGTCTTGAACAGGGTGCAATTTTAAGCCTTTCGCCAGAGCGGTTTATTCTTTGTGataat < 2:92360/90‑1 (MQ=255) ccGTGCGCCATTTAGCGCTTTTTTACGTCTTGAACAGGGTGCAATTTTAAGCCTTTCGCCAGAGCGGTTTATTCTTTGTGATAATAGTGa < 2:409301/90‑1 (MQ=255) | GTGAATCTCGCCCAAC‑GTTTTCATGCGACCTATTCTGGCGATGAATGGCAGGCATTCCTTCAGCTTAATCAGGCCAACCGCGCGCCATTTAGCGCTTTTTTACGTCTTGAACAGGGTGCAATTTTAAGCCTTTCGCCAGAGCGGTTTATTCTTTGTGATAATAGTGA > NZ_CP009273/1889695‑1889861 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |