| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,052,997 | T→C | M111V (ATG→GTG) | yeeO ← | toxic metabolite efflux MATE transporter YeeO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,052,997 | 0 | T | C | 100.0% | 47.3 / NA | 14 | M111V (ATG→GTG) | yeeO | toxic metabolite efflux MATE transporter YeeO |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (4/10); total (4/10) | |||||||||||
ACCATATTGAAGCTGTCCGCCAATCCCACGCCGGCCATCGCATCTTTTCCCAGCCAGCTGACCAGAAAAGTGCTCAGAACCCCCATCAACAGGACACAGGCATTCTCCATGAAGATAGGAACAGCAAGCGGGGTTATCTCGCGCCAGAACAACACTTTGTAGCTCTTGCGT > NZ_CP009273/2052912‑2053082 | aCCATATTGAAGCTGTCCGCCAATCCCACGCCGGCCATCGCATCTTTTCCCAGCCAGCTGACCAGAAAAGTGCTCAGAACCCCCACCAAc < 1:471906/90‑1 (MQ=255) cATATTGAAGCTGTCCGCCAATCCCACGCCGGCCATCGCATCTTTTCCCAGCCAGCTGACCAGAAAAGTGCTCAGAACCCCCACCAACAg < 2:343781/90‑1 (MQ=255) atatTGAAGCTGTCCGCCAATCCCACGCCGGCCATCGCATCTTTTCCCAGCCAGCTGACCAGAAAAGTGCTCAGAACCCCCACCAACAgg < 1:311226/90‑1 (MQ=255) tGAAGCTGTCCGCCAATCCCACGCCGGCCATCGCATCTTTTCCCAGCCAGCTGACCAGAAAAGTGCTCAGAACCCCCACCAACAGGacac < 1:243569/90‑1 (MQ=255) tGTCCGCCAATCCCACGCTGGCCATCGCATCTTTTCCCAGCCAGCTGACCAGAAAAGTGCTCAGAACCCCCACCAACAGGACACAGGCAt > 2:65195/1‑90 (MQ=255) aTCCCACGCCGGCCATCGCATCTTTTCCCAGCCAGCTGACCAGAAAAGTGCTCAGAACCCCCACCAACAGGACACAGGCATTCTCCATGa < 1:100519/90‑1 (MQ=255) aTCCCACGCCGGCCATCGCATCTTTTCCCAGCCAGCTGACCAGAAAAGTGCTCAGAACCCCCACCAACAGGACACAGGCATTCTCCATGa < 2:143148/90‑1 (MQ=255) cACGCCGGCCATCGCATCTTTTCCCAGCCAGCTGACCAGAAAAGTGCTCAGAACCCCCACCAACAGGACACAGGCATTCTCCATGAAGAt < 1:62615/90‑1 (MQ=255) gCATCTTTTCCCAGCCAGCTGACCAGAAAAGTGCTCAGAACCCCCACCAACAGGACACAGGCATTCTCCATGAAGATAGGAACAGCAAGc < 2:363586/90‑1 (MQ=255) cagccagcTGACCAGAAAAGTGCTCAGAACCCCCACCAACAGGACACAGGCATTCTCCATGAAGATAGGAACAGCAAGCGGGGTTAtctc < 1:65195/90‑1 (MQ=255) cAGAACCCCCACCAACAGGACACAGGCATTCTCCATGAAGATAGGAACAGCAAGCgg > 1:280076/1‑57 (MQ=255) cAGAACCCCCACCAACAGGACACAGGCATTCTCCATGAAGATAGGAACAGCAAGCgg < 2:280076/57‑1 (MQ=255) cAGAACCCCCACCAACAGGACACAGGCATTCTCCATGAAGATAGGAACAGCAAGCGGGGTTATCTCGCGCCAGAACAACACTTTGTAGct > 2:199502/1‑90 (MQ=255) cccACCAACAGGACACAGGCATTCTCCATGAAGATAGGAACAGCAAGCGGGGTTATCTCGCGCCAGAACAACACTTTGTAGCTCTTGCGt > 1:348877/1‑90 (MQ=255) | ACCATATTGAAGCTGTCCGCCAATCCCACGCCGGCCATCGCATCTTTTCCCAGCCAGCTGACCAGAAAAGTGCTCAGAACCCCCATCAACAGGACACAGGCATTCTCCATGAAGATAGGAACAGCAAGCGGGGTTATCTCGCGCCAGAACAACACTTTGTAGCTCTTGCGT > NZ_CP009273/2052912‑2053082 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |