| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,117,136 | A→T | I289N (ATC→AAC) | cpsB ← | mannose‑1‑phosphate guanyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,117,136 | 0 | A | T | 100.0% | 48.5 / NA | 15 | I289N (ATC→AAC) | cpsB | mannose‑1‑phosphate guanyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (8/7); total (8/7) | |||||||||||
CCAGATTCAGCATACACATAGCTGTTTTCAGTTTTGTGATTAATCACATCGCCGTGGCAAACGTTGCCCTCGGCGGTGTGGGCGCTGATCTCCCATAATGAAGACCAGGAGCCAACATCGCTCCAGCCCGCATCCATCGGCACCACAACAGCATCTGCCGTACGTTCCATGA > NZ_CP009273/2117049‑2117220 | ccAGATTCAGCATACACATAGCTGTTTTCAGTTTTGTGATTAATCACATCGCCGTGGCAAACGTTGCCCTCGGCGGTGTGGGCGCTGTtc < 2:322255/90‑1 (MQ=255) tCAGCATACACATAGCTGTTTTCAGTTTTGTGATTAATCACATCGCCGTGGCAAACGTTGCCCTCGGCGGTGTGGGCGCTGTTCTCCCAt < 1:212041/90‑1 (MQ=255) tAGCTGTTTTCAGTTTTGTGATTAATCACATCGCCGTGGCAAACGTTGCCCTCGGCGGTGTGGGCGCTGTTCTCCCATAATGAAGACCAg < 1:221368/90‑1 (MQ=255) tAGCTGTTTTCAGTTTTGTGATTAATCACATCGCCGTGGCAAACGTTGCCCTCGGCGGTGTGGGCGCTGTTCTCCCATAATGAAGACCAg < 1:294205/90‑1 (MQ=255) gTTTTCAGTTTTGTGATTAATCACATCGCCGTGGCAAACGTTGCCCTCGGCGGTGTGGGCGCTGTTCTCCCATAATGAAGACCAGGAGcc > 1:79029/1‑90 (MQ=255) gTTTTCAGTTTTGTGATTAATCACATCGCCGTGGCAAACGTTGCCCTCGGCGGTGTGGGCGCTGTTCTCCCATAATGAAGACCAGGAGcc > 2:125859/1‑90 (MQ=255) ttttCAGTTTTGTGATTAATCACATCGCCGTGGCAAACGTTGCCCTCGGCGGTGTGGGCGCTGTTCTCCCATAATGAAGACCAGGAGCCa > 1:112525/1‑90 (MQ=255) gTTTTGTGATTAATCACATCGCCGTGGCAAACGTTGCCCTCGGCGGTGTGGGCGCTGTTCTCCCATAATGa < 1:207219/71‑1 (MQ=255) gTTTTGTGATTAATCACATCGCCGTGGCAAACGTTGCCCTCGGCGGTGTGGGCGCTGTTCTCCCATAATGa > 2:207219/1‑71 (MQ=255) ttGTGATTAATCACATCGCCGTGGCAAACGTTGCCCTCGGCGGTGTGGGCGCTGTTCTCCCATAATGAAGACCAGGAGCCAACATCGCTc > 1:140508/1‑90 (MQ=255) ttGTGATTAATCACATCGCCGTGGCAAACGTTGCCCTCGGCGGTGTGGGCGCTGTTCTCCCATAATGAAGACCAGGAGCCAACATCGCTc > 1:286457/1‑90 (MQ=255) aaTCACATCGCCGTGGCAAACGTTGCCCTCGGCGGTGTGGGAGCTGTTCTCCCATAATGAAGACCAGGAGCCAACATCGCTCCAGCCCGc < 1:394377/90‑1 (MQ=255) cggcggTGTGGGCGCTGTTCTCCCATAATGAAGACCAGGAGCCAACATCGCTCCAGCCCGCATCCATCGGCACCACAACAGCATCTGCCg > 2:20002/1‑90 (MQ=255) cggTGTGGGCGCTGTTCTCCCATAATGAAGACCAGGAGCCAACATCGCTCCAGCCCGCATCCATCGGCACCACAACAGCATCTGCCGTAc < 2:286457/90‑1 (MQ=255) cgcTGTTCTCCCATAATGAAGACCAGGAGCCAACATCGCTCCAGCCCGCATCCATCGGCACCACAACAGCATCTGCCGTACGTTCCATGa > 1:324678/1‑90 (MQ=255) | CCAGATTCAGCATACACATAGCTGTTTTCAGTTTTGTGATTAATCACATCGCCGTGGCAAACGTTGCCCTCGGCGGTGTGGGCGCTGATCTCCCATAATGAAGACCAGGAGCCAACATCGCTCCAGCCCGCATCCATCGGCACCACAACAGCATCTGCCGTACGTTCCATGA > NZ_CP009273/2117049‑2117220 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |