| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,446,677 | T→C | pseudogene (1804/2646 nt) | yfcU ← | fimbrial usher protein YfcU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,446,677 | 0 | T | C | 100.0% | 61.8 / NA | 19 | pseudogene (1804/2646 nt) | yfcU | fimbrial usher protein YfcU |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (8/11); total (8/11) | |||||||||||
GTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCG > NZ_CP009273/2446596‑2446760 | gtTTGTCACTGGTGCCGATGTTCAACTGATAGTTAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGCCCCACTGc > 2:107156/1‑90 (MQ=255) tCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGCCCCACTGCCATAg > 2:232647/1‑90 (MQ=255) cACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGCCCCACTGCCATAGt > 1:93300/1‑90 (MQ=255) tGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGCCCCACTGCCATAGTTGc < 1:232647/90‑1 (MQ=255) ggTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGCCCCACTGCCATAGTTGcc > 2:42355/1‑90 (MQ=255) cAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGCCCCACTGCCATAGTTGCCGTTATAGCTAAc < 2:69616/90‑1 (MQ=255) gATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGCCCCACTGCCATAGTTGCCGTTATAGCTAACGGTAc < 1:34085/90‑1 (MQ=255) aGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGCCCCACTg > 1:358253/1‑55 (MQ=255) aGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGCCCCACTg < 2:358253/55‑1 (MQ=255) gTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGCCCCACTGCCATAGTTGCCGTTATAGCTAACGGGACTGTTGTCg > 1:67175/1‑90 (MQ=255) gcgTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGCCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGccc < 2:73196/90‑1 (MQ=255) gcgTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGCCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGccc < 1:107156/90‑1 (MQ=255) ccggcATCGCCACGGCTAAAATACCCGCCCTGGCCGCTGTCCGCCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGccc < 2:449278/86‑1 (MQ=255) aCCTGGCTGCTGTCCGCCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATACTGAGCGAAATCTACATg < 2:338209/90‑1 (MQ=255) cTGGCTGCTGTCCGCCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATACTGAGCGAAATCTACATGcc < 1:399023/90‑1 (MQ=255) gctgTCCGCCCCCCTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATACTGAGCGAAATCTACATGCCCTTATc < 2:236316/90‑1 (MQ=255) ctgTCCGCCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATACt < 2:110137/65‑1 (MQ=255) ctgTCCGCCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATACt > 1:110137/1‑65 (MQ=255) tgTCCGCCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCg > 2:293114/1‑90 (MQ=255) | GTTTGTCACTGGTGCCGATGTTCAACTGATAGTGAGTCGCGTCATCGACACGGCTAAAATAACCGACCTGGCTGCTGTCCGTCCCACTGCCATAGTTGCCGTTATAGCTAACGGTACTGTTGTCGCCCCACGGCATACTGAGCGAAATCTACATGCCCTTATCCG > NZ_CP009273/2446596‑2446760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |