| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,520,662 | T→C | S120P (TCA→CCA) | yfeH → | bile acid:sodium symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,520,662 | 0 | T | C | 100.0% | 62.1 / NA | 18 | S120P (TCA→CCA) | yfeH | bile acid:sodium symporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (10/8); total (10/8) | |||||||||||
AAATGTCGACCCGATGCTCTACTCCGGTTTTCTCTACTTGTGCATTCTCCCGGCTACCGTGCAGTCTGCAATCGCCTTCACGTCAATGGCGGGCGGTAACGTCGCGGCAGCGGTTTGTTCTGCGTCGGCATCCAGCCTGCTGGGGATTTTCCTTTCACCATTGCTGGTT > NZ_CP009273/2520580‑2520748 | aaaTGTCGACCCGATGCTCTACTCCGGTTTTCTCTACTTGTGCATTCTCCCGGCTACCGTGCAGTCTGCAATCGCCTTCACGCCAATggc < 2:301613/90‑1 (MQ=255) gACCCGATGCTCTACTCCGGTTTTCTCTACTTGTGCATTCTCCCGGCTACCGTGCAGTCTGCAATCGCCTTCACGCCAATGGCGGGCGGt > 2:93486/1‑90 (MQ=255) gACCCGATGCTCTACTCCGGTTTTCTCTACTTGTGCATTCTCCCGGCTACCGTGCAGTCTGCAATCGCCTTCACGCCAATGGCGGGCGGt > 2:348350/1‑90 (MQ=255) tACTCCGGTTTTCTCTACTTGTGCATTCTCCCGGCTACCGTGCAGTCTGCAATCGCCTTCACGCCAATGGCGGGCGGTAACGTCGCGGCa > 2:404721/1‑90 (MQ=255) gCATTCTCCCGGCTACCGTGCAGTCTGCAATCGCCTTCACGCCAATGGCGGGCGGTAACGTCGCGGCAGCGGTTTGTTCTGCGTCGGCAt < 2:427560/90‑1 (MQ=255) ctcCCGGCTACCGTGCAGTCTGCAATCGCCTTCACGCCAATGGCGGGCGGTAACGTCGCGGCAGCGGTTTGTTCTGCGTCGGCATCCAGc > 1:180492/1‑90 (MQ=255) cccGGCTACCGTGCAGTCTGCAATCGCCTTCACGCCAATGGCGGGCGGGAACGTCGCGGCCGCGGGTTGTTCTGCGGCGGCCTCCAGCct > 2:151360/1‑90 (MQ=255) ccGTGCAGTCTGCAATCGCCTTCACGCCAATGGCGGGCGGTAACGTCGCGGCAg < 2:354485/54‑1 (MQ=255) ccGTGCAGTCTGCAATCGCCTTCACGCCAATGGCGGGCGGTAACGTCGCGGCAg > 1:354485/1‑54 (MQ=255) tGCAGTCTGCAATCGCCTTCACGCCAATGGCGGGCGGTAACGTCGCGGCAGCGGTTTGTTCTGCGTCGGCATCCAGCCTGCTGGGGAttt < 1:348350/90‑1 (MQ=255) gTCTGCAATCGCCTTCACGCCAATGGCGGCCGGTAACGTCGCGGCAGCGGTTTGTTCTGCGTCg < 1:397577/64‑1 (MQ=255) gTCTGCAATCGCCTTCACGCCAATGGCGGCCGGTAACGTCGCGGCAGCGGTTTGTTCTGCGTCg > 2:397577/1‑64 (MQ=255) aaTCGCCTTCACGCCAATGGCGGGCGGTAACGTCGCGGCAGCGGTTTGTTCTGCGTCGGCATCCAGCCTGCTGGGGATTTTCCTTTCAcc < 1:404721/90‑1 (MQ=255) aTCGCCTTCACGCCAATGGCGGGCGGTAACGTCGCGGCAGCGGTTTGTTCTGCGTCGGCATCCAGCCTGCTGGGGAttt < 2:148367/79‑1 (MQ=255) aTCGCCTTCACGCCAATGGCGGGCGGTAACGTCGCGGCAGCGGTTTGTTCTGCGTCGGCATCCAGCCTGCTGGGGAttt > 1:148367/1‑79 (MQ=255) tCACGCCAATGGCGGGCGGTAACGTCGCGGCAGCGGTTTGTTCTGCGTCGGCATCCAGCCTGCTGGGGATTTTCCTTTCACCATTGCtgg > 1:11796/1‑90 (MQ=255) tCACGCCAATGGCGGGCGGTAACGTCGCGGCAGCGGTTTGTTCTGCGTCGGCATCCAGCCTGCTGGGGATTTTCCTTTCACCATTGCtgg > 2:340508/1‑90 (MQ=255) aCGCCAATGGCGGGCGGTAACGTCGCGGCAGCGGTTTGTTCTGCGTCGGCATCCAGCCTGCTGGGGATTTTCCTTTCACCATTGCtggtt < 1:93486/90‑1 (MQ=255) | AAATGTCGACCCGATGCTCTACTCCGGTTTTCTCTACTTGTGCATTCTCCCGGCTACCGTGCAGTCTGCAATCGCCTTCACGTCAATGGCGGGCGGTAACGTCGCGGCAGCGGTTTGTTCTGCGTCGGCATCCAGCCTGCTGGGGATTTTCCTTTCACCATTGCTGGTT > NZ_CP009273/2520580‑2520748 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |