| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,862,116 | T→C | intergenic (‑4/+136) | nlpD ← / ← pcm | murein hydrolase activator NlpD/protein‑L‑isoaspartate O‑methyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,862,116 | 0 | T | C | 100.0% | 67.3 / NA | 20 | intergenic (‑4/+136) | nlpD/pcm | murein hydrolase activator NlpD/protein‑L‑isoaspartate O‑methyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (6/14); total (6/14) | |||||||||||
GTCAGAACAGCCTGCCAGCCATAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACG > NZ_CP009273/2862029‑2862197 | gtCAGAACAGCCTGCCAGCCATAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTAccc > 1:262438/1‑90 (MQ=255) aGCCTGCCAGCCATAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTACCCCCCAGGaa > 1:521146/1‑90 (MQ=255) gCCTGCCAGCCATAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTACCCCCCAGGaaa > 1:432050/1‑90 (MQ=255) ccTGCCAGCCATAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTACCCCCCAGGaaaa > 2:33851/1‑90 (MQ=255) ccagccaTAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTACCCCCCAGGAAAAATTg < 1:26568/90‑1 (MQ=255) aCCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTACCCCCCAGGAAAAATTGGTTAATAACCAGTg < 2:521146/90‑1 (MQ=255) aCCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTACCCCCCAGGAAAAATTGGTTAATAACCAGTg < 2:380544/90‑1 (MQ=255) aCCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTACCCCCCAGGAAAAATTGGTTAATAACCAGTg < 1:520371/90‑1 (MQ=255) cAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTACCCCCCAGGAAAAATTGGTTAATAACCAGTGAc < 1:425193/90‑1 (MQ=255) aaGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTACCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTAc > 1:195857/1‑90 (MQ=255) aaGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTACCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTAc < 2:43972/90‑1 (MQ=255) aGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTACCCCCCAGGAAAAATTGGTTAATAAcc > 2:54607/1‑75 (MQ=255) aGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTACCCCCCAGGAAAAATTGGTTAATAAcc < 1:54607/75‑1 (MQ=255) tGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTACCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAgg < 1:381910/90‑1 (MQ=255) ggcgAACGGTGAATTTTGGGCTTCCCGCGCTCATTTACCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCAc < 1:42655/90‑1 (MQ=255) ggcgAACGGTGAATTTTGGGCTTCCCGCGCTCATTTACCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCAc < 1:420379/90‑1 (MQ=255) ggcgAACGGTGAATTTTGGGCTTCCCGCGCTCATTTACCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCAc < 1:179676/90‑1 (MQ=255) aaTTTTGGGCTTCCCGCGCTCATTTACCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAaca < 2:432050/90‑1 (MQ=255) cTTCCCGCGCTCATTTACCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAg > 1:129520/1‑90 (MQ=255) ttCCCGCGCTCATTTACCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGa < 1:206146/90‑1 (MQ=255) cTCATTTACCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACg < 2:430312/90‑1 (MQ=255) | GTCAGAACAGCCTGCCAGCCATAGCGAAACCAGTGACAAAGCCGCAATGCGGCGAACGGTGAATTTTGGGCTTCCCGCGCTCATTTATCCCCCAGGAAAAATTGGTTAATAACCAGTGACATAATTACCGTGCAAGGCACCCTACTGAACACTGGAAAAGATGTTCACG > NZ_CP009273/2862029‑2862197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |