| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,345,818 | T→C | G189G (GGA→GGG) | arcB ← | aerobic respiration two‑component sensor histidine kinase ArcB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,345,818 | 0 | T | C | 100.0% | 52.2 / NA | 16 | G189G (GGA→GGG) | arcB | aerobic respiration two‑component sensor histidine kinase ArcB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (7/9); total (7/9) | |||||||||||
TTTTTCATCGGTTTCAATGACTTTTGCGGCGGCTTCCGGTGAGTAAACATCAGCAGGTTTCAGGTGAACCAGTTGTTTTTCGCTTTTTCCGGTCAGCAGCTCCATCGCGCGGTTACAGCCGGAAAACTCTTTATCTTCGTTACGATAAAAAACCAGGTCGGGTGAAGCATC > NZ_CP009273/3345731‑3345901 | tttttCATCGGTTTCAATGACTTTTGCGGCGGCTTCCGGTGAGTAAACATCAGCAGGTTTCAGGTGAACCAGTTGTTTTTCGCTTTTccc > 1:445042/1‑90 (MQ=255) tCATCGGTTTCAATGACTTTTGCGGCGGCTTCCGGTGAGTAAACATCAGCAGGTTTCAGGTGAACCAGTTGTTTTTCGCTTTTCCCGGTc > 1:253776/1‑90 (MQ=255) tCGGTTTCAATGACTTTTGCGGCGGCTTCCGGTGAGTAAACATCAGCAGGTTTCAGGTGAACCAGTTGTTTTTCGCTTTTCCCGGTcagc < 2:253776/90‑1 (MQ=255) cTTTTGCGGCGGCTTCCGGTGAGTAAACATCAGCAGGTTTCAGGTGAACCAGTTGTTTTTCGCTTTTCCCGGTCAGCAGCTCCATcgcgc < 2:407397/90‑1 (MQ=255) ccGGTGAGTAAACATCAGCAGGTTTCAGGTGAACCAGTTGTTTTTCGCTTTTCCCGGTCAGCAGCTCCATCGCGCGGTTACAGCCGGaaa < 1:186361/90‑1 (MQ=255) ccGGTGAGTAAACATCAGCAGGTTTCAGGTGAACCAGTTGTTTTTCGCTTTTCCCGGTCAGCAGCTCCATCGCGCGGTTACAGCCGGaaa < 2:430757/90‑1 (MQ=255) ccGGTGAGTAAACATCAGCAGGTTTCAGGTGAACCAGTTGTTTTTCGCTTTTCCCGGTCAGCAGCTCCATCGCGCGGTTACAGCCGGaaa < 2:345059/90‑1 (MQ=255) gAGTAAACATCAGCAGGTTTCAGGTGAACCAGTTGTTTTTCGCTTTTCCCGGTCAGCAGCTCCATCGCGCGGTTACAGCCGGAAAActct > 1:94105/1‑90 (MQ=255) cagcagGTTTCAGGTGAACCAGTTGTTTTTCGCTTTTCCCGGTCAGCAGCTCCATCGCGCGGTTACAGCCGGAAAACTCTTTATCTTCGt > 1:8621/1‑90 (MQ=255) cAGGTGAACCAGTTGTTTTTCGCTTTTCCCGGTCAGCAGCTCCATCGCGCGGTTACAGCCGGaaa < 1:467309/65‑1 (MQ=255) cAGGTGAACCAGTTGTTTTTCGCTTTTCCCGGTCAGCAGCTCCATCGCGCGGTTACAGCCGGaaa > 2:467309/1‑65 (MQ=255) gAACCAGTTGTTTTTCGCTTTTCCCGGTCAGCAGCTCCATcgcgc < 1:131260/45‑1 (MQ=255) gAACCAGTTGTTTTTCGCTTTTCCCGGTCAGCAGCTCCATcgcgc > 2:131260/1‑45 (MQ=255) ccAGTTGTTTTTCGCTTTTCCCGGTCAGCAGCTCCATCGCGCGGTTACAGCCGGAAAACTCTTTATCTTCGTTACGATAAAAAACCAGGt < 1:220745/90‑1 (MQ=255) aGTTGTTTTTCGCTTTTCCCGGTCAGCAGCTCCATCGCGCGGTTACAGCCGGAAAACTCTTTATCTTCGTTACGATAAAAAACCAGGTCg > 2:82017/1‑90 (MQ=255) ttttCGCTTTTCCCGGTCAGCAGCTCCATCGCGCGGTTACAGCCGGAAAACTCTTTATCTTCGTTACGATAAAAAACCAGGTCGGGTGaa < 1:385902/90‑1 (MQ=255) gCTTTTCCCGGTCAGCAGCTCCATCGCGCGGTTACAGCCGGAAAACTCTTTATCTTCGTTACGATAAAAAACCAGGTCGGGTGAAGCATc > 2:30470/1‑90 (MQ=255) | TTTTTCATCGGTTTCAATGACTTTTGCGGCGGCTTCCGGTGAGTAAACATCAGCAGGTTTCAGGTGAACCAGTTGTTTTTCGCTTTTTCCGGTCAGCAGCTCCATCGCGCGGTTACAGCCGGAAAACTCTTTATCTTCGTTACGATAAAAAACCAGGTCGGGTGAAGCATC > NZ_CP009273/3345731‑3345901 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |