| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,743,001 | C→T | A137V (GCG→GTG) | sgbU → | L‑ribulose‑5‑phosphate 3‑epimerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,743,001 | 0 | C | T | 100.0% | 68.4 / NA | 20 | A137V (GCG→GTG) | sgbU | L‑ribulose‑5‑phosphate 3‑epimerase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (13/7); total (13/7) | |||||||||||
TCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT > NZ_CP009273/3742918‑3743087 | tCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGTGTGGGc > 2:34583/1‑90 (MQ=255)tCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGTGTGGGc > 2:145690/1‑90 (MQ=255)tCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGTGTGGGc > 1:45818/1‑90 (MQ=255) aaGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGTGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCgg > 1:150698/1‑90 (MQ=255) gACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGTGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTg > 2:405380/1‑90 (MQ=255) gACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGTGT‑GGCAGGCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGgggg > 2:34772/1‑90 (MQ=255) gACCACGACGAAGGCACCCGGCAACGTTTCGCTGAAGGGCTGGTGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTg > 2:34773/1‑90 (MQ=255) ccACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGTGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGga < 2:150698/90‑1 (MQ=255) cACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGTGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGgag > 1:225576/1‑90 (MQ=255) cgacgaAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGTGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCgg < 2:190821/83‑1 (MQ=255) cgacgaAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGTGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCgg > 1:190821/1‑83 (MQ=255) ggCACCCGGCAACGTTTTGCTGAAGGGCTGGTGTGGGCAGTCGAACAGGCGGCGTCATCACAAGTAATGCTGGCGGTGGAGATTATGGAt < 2:134769/90‑1 (MQ=255) ttGCTGAAGGGCTGGTGTGGGCAGTCGAACAggcg > 1:373970/1‑35 (MQ=255) ttGCTGAAGGGCTGGTGTGGGCAGTCGAACAggcg < 2:373970/35‑1 (MQ=38) ttGCTGAAGGGCTGGTGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGga > 1:344842/1‑64 (MQ=255) ttGCTGAAGGGCTGGTGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGga < 2:344842/64‑1 (MQ=255) ttGCTGAAGGGCTGGTGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACt > 1:9718/1‑90 (MQ=255) gAAGGGCTGGTGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATc > 1:301610/1‑90 (MQ=255) tGGTGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCCAAt < 1:104681/90‑1 (MQ=255) tGGTGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAt < 1:401893/90‑1 (MQ=255) | TCGCACCATCCAGCTGGCAGGTTATGACGTCTATTACGAAGACCACGACGAAGGCACCCGGCAACGTTTTGCTGAAGGGCTGGCGTGGGCAGTCGAACAGGCGGCGGCATCACAAGTAATGCTGGCGGTGGAGATTATGGATACCGCGTTTATGAACTCCATCAGCAAAT > NZ_CP009273/3742918‑3743087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |