| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,168,262 | A→G | intergenic (+46/‑113) | nusG → / → rplK | transcription termination/antitermination protein NusG/50S ribosomal protein L11 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,168,262 | 0 | A | G | 100.0% | 50.3 / NA | 15 | intergenic (+46/‑113) | nusG/rplK | transcription termination/antitermination protein NusG/50S ribosomal protein L11 |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (6/9); total (6/9) | |||||||||||
GCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGC > NZ_CP009273/4168186‑4168347 | gCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGGGATTGGAATACaa > 1:497169/1‑90 (MQ=255) ggACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGGGATTGGAATACAAttt > 2:55761/1‑90 (MQ=255) ggTTGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGGGAtt < 1:155812/66‑1 (MQ=255) ggTTGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGGGAtt > 2:155812/1‑66 (MQ=255) aaCCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGGGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTg < 2:447534/90‑1 (MQ=255) gCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGGGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTa > 1:151654/1‑90 (MQ=255) ggcgATTTAATCGTTGCACAAGGCGTGGGATTGGAATACAATTTCGCGCCTTTTGTTTTTAt < 1:90523/62‑1 (MQ=255) ggcgATTTAATCGTTGCACAAGGCGTGGGATTGGAATACAATTTCGCGCCTTTTGTTTTTAt > 2:90523/1‑62 (MQ=255) gcgATTTAATCGTTGCACAAGGCGTGGGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTtata > 2:168915/1‑90 (MQ=255) aTCGTTGCAGAAGGCGTGGGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACgggg < 2:345633/90‑1 (MQ=255) aTCGTTGCACAAGGCGTGGGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACgggg < 1:510272/90‑1 (MQ=255) acaAGGCGTGGGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCtctc < 2:226142/90‑1 (MQ=255) aaGGCGTGGGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCag < 1:164604/90‑1 (MQ=255) cGTGGGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGc < 1:207429/90‑1 (MQ=255) cGTGGGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGc < 2:412632/90‑1 (MQ=255) | GCTGGACTTCAGCCAGGTTGAAAAAGCCTAACCCAGCGATCAAAAAAGCGGCGATTTAATCGTTGCACAAGGCGTGAGATTGGAATACAATTTCGCGCCTTTTGTTTTTATGGGCCTTGCCCGTAAAACGATTTTTTATATCACGGGGAGCCTCTCAGAGGC > NZ_CP009273/4168186‑4168347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |