| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,248,506 | A→G | R261R (CGA→CGG) | dinF → | MATE family efflux transporter DinF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,248,506 | 0 | A | G | 100.0% | 57.6 / NA | 17 | R261R (CGA→CGG) | dinF | MATE family efflux transporter DinF |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (10/7); total (10/7) | |||||||||||
TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCACCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACG > NZ_CP009273/4248423‑4248591 | ttGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGGCTgggg < 2:521091/90‑1 (MQ=255) cTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGGCTGGGGAGt < 2:241820/90‑1 (MQ=255) cATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGGCTGGGGAGTGACATTATCGCTGTTAAcgc < 2:240616/90‑1 (MQ=255) gcGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGGCTGGGGAGTGACATTATCGCTGTTAACGCGGTTCt > 1:17048/1‑90 (MQ=255) gcGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGGCTGGGGAGTGACATTATCGCTGTTAACGCGGTTCt > 1:45587/1‑90 (MQ=255) gTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGGCTGGGGAGTGACATTATCGCTGTTAACGCGGTTCtga > 1:126336/1‑90 (MQ=255) gTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGGCTGGGGAGTGACATTATCGCTGTTAACGCGGTTCtga > 2:85805/1‑90 (MQ=255) gTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGGCTGGGGAGTGACATTATCGCTGTTAACGCGGTTCtga > 2:400392/1‑90 (MQ=255) gTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGGCTGGGGAGTGACATTATCGCTGTTAACGCGGTTCtga > 1:46487/1‑90 (MQ=255) gTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGGCTGGGGAGTGACATTATCGCTGTTAACGCGGTTCtga > 1:111799/1‑90 (MQ=255) tgttgCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGGCTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTAc < 1:85805/90‑1 (MQ=255) tgttgCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGGCTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTAc < 1:332861/90‑1 (MQ=255) tgttgCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGGCTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTAc < 1:173560/90‑1 (MQ=255) ctGTTTCGGCGCGATCACCGTACTTGGCGCGCGGCTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCACCTTTAc > 1:372948/1‑90 (MQ=255) tGTTTCGGCGCGATCACCGTACTTGGCGCGCGGCTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCACCTTTAcc < 2:271496/90‑1 (MQ=255) tGGCGCGCGGCTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCACCTTTACCGCCTATGCGCTGGATGGTTTTGc > 2:427021/1‑90 (MQ=255) cgcgGCTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCACCTTTACCGCCTATGCGCTGGATGGTTTTGCCTAcg > 1:91165/1‑90 (MQ=255) | TTGCTGGCGCTTAACCGCGATATCATGCTGCGTTCGCTGTTGTTGCAACTCTGTTTCGGCGCGATCACCGTACTTGGCGCGCGACTGGGGAGTGACATTATCGCTGTTAACGCGGTTCTGATGACGCTACTCACCTTTACCGCCTATGCGCTGGATGGTTTTGCCTACG > NZ_CP009273/4248423‑4248591 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |