| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,278,646 | A→C | T319P (ACC→CCC) | nrfA → | ammonia‑forming nitrite reductase cytochrome c552 subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,278,646 | 0 | A | C | 100.0% | 59.4 / NA | 17 | T319P (ACC→CCC) | nrfA | ammonia‑forming nitrite reductase cytochrome c552 subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (10/7); total (10/7) | |||||||||||
TGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGCAGTCGATTAACGACCTGAAAATCAAGGTTGAAGATCAAC > NZ_CP009273/4278560‑4278730 | tGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATcccc < 1:345649/90‑1 (MQ=255)tGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATcccc < 2:411123/90‑1 (MQ=255) cGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATCCCCAGGACAAAGc < 1:123179/90‑1 (MQ=255) cGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATCCCCAGGACAAAGc < 1:283207/90‑1 (MQ=255) gACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATCCCCAGGACAAAGCTGCCTTGCAAAAAGTGGTc > 1:516852/1‑90 (MQ=255) gACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATCCCCAGGACAAAGCTGCCTTGCAAAAAGTGGTc > 2:58068/1‑90 (MQ=255) gACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATCCCCAGGACAAAGCTGCCTTGCAAAAAGTGGTc > 2:48995/1‑90 (MQ=255) gACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATCCCCAGGACAAAGCTGCCTTGCAAAAAGTGGTc > 2:40015/1‑90 (MQ=255) gACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATCCCCAGGACAAAGCTGCCTTGCAAAAAGTGGTc > 1:105541/1‑90 (MQ=255) gACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATCCCCAGGACAAAGCTGCCTTGCAAAAAGTGGTc > 1:267530/1‑90 (MQ=255) cATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATCCCCAGGACAAAGCTGCCTTGCAAAAAGTGGTcgcg < 2:199084/90‑1 (MQ=255) cATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATCCCCAGGACAAAGCTGCCTTGCAAAAAGTGGTcgcg > 1:116913/1‑90 (MQ=255) ccGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATCCCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGCAGTCg < 1:380021/90‑1 (MQ=255) tGATAACTTCGCCCAGACTTGTGCGAACTGCCATCCCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGCAGTCGATTaa < 1:40015/90‑1 (MQ=255) ttCGCCCAGACTTGTGCGAACTGCCATCCCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGCAGTCGATTAACGACCTg > 2:281001/1‑90 (MQ=255) gACTTGTGCGAACTGCCATCCCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGCAGTCGATTAACGACCTGAAAATCaa > 2:211098/1‑90 (MQ=255) tgtgCGAACTGCCATCCCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGCAGTCGATTAACGACCTGAAAATCAAGGtt < 2:324087/90‑1 (MQ=255) aaCTGCCATCCCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGCAGTCGATTAACGACCTGAAAATCAAGGTTGAAGAt > 2:328356/1‑90 (MQ=255) gCCATCCCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGCAGTCGATTAACGACCTGAAAATCAAGGTTGAAGATCAAc < 1:425090/90‑1 (MQ=255) | TGCAGAACGCCGAAGGCAAACTCTACACCGACCATAAAATTGGTAATCCGTTTGATAACTTCGCCCAGACTTGTGCGAACTGCCATACCCAGGACAAAGCTGCCTTGCAAAAAGTGGTCGCGGAACGTAAGCAGTCGATTAACGACCTGAAAATCAAGGTTGAAGATCAAC > NZ_CP009273/4278560‑4278730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |