| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,293,463 | T→C | D155G (GAC→GGC) | mdtN ← | multidrug efflux transporter periplasmic adaptor subunit MdtN |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,293,463 | 0 | T | C | 100.0% | 66.9 / NA | 20 | D155G (GAC→GGC) | mdtN | multidrug efflux transporter periplasmic adaptor subunit MdtN |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (10/10); total (10/10) | |||||||||||
GCTGACGGCGCTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCGGTGCGGCGTAATGTATCTGTGGCCTGTTTCGCGGCGGCA > NZ_CP009273/4293378‑4293546 | gcTGACGGCGCTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGCCAAc > 2:312530/1‑90 (MQ=255) cTGACGGCGCTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGCCAACa < 2:95412/90‑1 (MQ=255) gcgcTGGCGGCTGACTGCGGCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGCCAACATCTTcc > 1:303833/1‑90 (MQ=255) cgcTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGCCAACATCTTCCg > 1:505949/1‑90 (MQ=255) tGTAACAATACGGCATTAAGATCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGCCAACATCTTCCGCTGAGACAAAACCTTCTTTc < 2:152479/90‑1 (MQ=255) tGTAACAATACGGCATTAAGATCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGCCAACATCTTCCGCTGAGACAAAACCTTCTTTc < 1:289999/90‑1 (MQ=255) cAATACGGCATTAAGATCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGCCAACATCTTCCGCTGAGACAAAAACTTCTTTCAGTaa < 1:249329/90‑1 (MQ=255) tACGGCATTAAGATCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGCCAACATCTTCCGCTGAGACAAAACCTTCTTTc < 1:402053/82‑1 (MQ=255) tACGGCATTAAGATCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGCCAACATCTTCCGCTGAGACAAAACCTTCTTTc > 2:402053/1‑82 (MQ=255) ggCATTAAGATCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGCCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTc < 2:269623/90‑1 (MQ=255) ttAAGATCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGCCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCGGTg > 2:353379/1‑90 (MQ=255) gATCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGCCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCGGTgcggc < 2:237282/90‑1 (MQ=255) tCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGCCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCGGTGCGGCGt < 1:360827/90‑1 (MQ=255) tCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGCCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCGGTGCGGCGt < 2:95943/90‑1 (MQ=255) ccGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGCCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCGGTGCGGCGTa > 2:259459/1‑90 (MQ=255) gCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGCCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCGGTGCGGCGTAAt > 2:116367/1‑90 (MQ=255) gcgcTGCGCCGTTCTTGCACGGCCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCGGTGCGGCGTAATGTATCTGTGGc > 2:512542/1‑90 (MQ=255) gcgcCGTTCTTGCACGGCCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCGGTGCGGCGTAATGTATCTGTGGCCTGtt > 2:130877/1‑90 (MQ=255) gTTCTTGCACGGCCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCGGTGCGGCGTAATGTATCTGTGGCCTGTTTcgcg > 2:210900/1‑90 (MQ=255) gCACGGCCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCGGTGCGGCGTAATGTATCTGTGGCCTGTTTCGCGGCGGCa < 1:259459/90‑1 (MQ=255) | GCTGACGGCGCTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCGGTGCGGCGTAATGTATCTGTGGCCTGTTTCGCGGCGGCA > NZ_CP009273/4293378‑4293546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |