| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,534,634 | A→G | S172G (AGC→GGC) | fimC → | type 1 fimbria chaperone FimC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,534,634 | 0 | A | G | 100.0% | 70.7 / NA | 21 | S172G (AGC→GGC) | fimC | type 1 fimbria chaperone FimC |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (10/11); total (10/11) | |||||||||||
GCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACGCTGATTAACCCGACACCCTATTACCTGACGGTAACAGAGTTGAATGCCGGAACCCGGGTTCTTGAA > NZ_CP009273/4534557‑4534717 | gCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAATtctc > 1:198777/1‑90 (MQ=255) tACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAATTCTCTGACGc > 2:85381/1‑85 (MQ=255) tACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAATTCTCTGACGc < 1:85381/85‑1 (MQ=255) aTCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAATTCTCTGACGCTGATTAAcc > 1:205239/1‑90 (MQ=255) aTCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAATTCTCTGACGCTGATTAAcc > 2:184679/1‑90 (MQ=255) gCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAAt > 1:337605/1‑68 (MQ=255) gCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAAt < 2:337605/68‑1 (MQ=255) gCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAATTCTCTGACGCTGATTAACCCGa > 1:307124/1‑90 (MQ=255) cccGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAATTCTCTGACGCTGATTAACCCGac < 1:309313/90‑1 (MQ=255) ccGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAATTCTCTGACGCTGATTAACCCGaca < 2:406902/90‑1 (MQ=255) ccGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAATTCTCTGACGCTGATTAACCCGaca > 2:214529/1‑90 (MQ=255) ccGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAATTCTCTGACGCTGATTAACCCGaca > 2:300462/1‑90 (MQ=255) ccGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAATTCTCTGACGCTGATTAACCCGaca < 2:362016/90‑1 (MQ=255) ggCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAATTCTCTGACGCTGATTAACCCGACAcc < 2:266195/90‑1 (MQ=255) tAGCGTTGCCACCCGATCAGGCCGCAGAAAAACTAAGATTTCGTCGTGGCGCGAATTCTCTGACGCTGATTAACCCGACACCCTATTAcc < 2:130100/90‑1 (MQ=255) gCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAATTCTCTGACGCTGATTAACCCGACACCCTATTACCTg > 2:452676/1‑90 (MQ=255) aCCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAATTCTCTGACGCTGATTAACCCGACACCCTATTACCTGACGGTAAc < 1:178035/90‑1 (MQ=255) aCCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAATTCTCTGACGCTGATTAACCCGACACCCTATTACCTGACGGTAAc < 1:300462/90‑1 (MQ=255) aTCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAATTCTCTGAc < 2:307213/49‑1 (MQ=255) aTCAGGCCGCAGAAAAATTAAGATTTCGTCGTGGCGCGAATTCTCTGAc > 1:307213/1‑49 (MQ=255) cgtcgtGGCGCGAATTCTCTGACGCTGATTAACCCGACACCCTATTACCTGACGGTAACAGAGTTGAATGCCGGAACCCGGGTTCTTGaa < 1:214529/90‑1 (MQ=255) | GCATTAAACTGTACTATCGCCCGGCTAAATTAGCGTTGCCACCCGATCAGGCCGCAGAAAAATTAAGATTTCGTCGTAGCGCGAATTCTCTGACGCTGATTAACCCGACACCCTATTACCTGACGGTAACAGAGTTGAATGCCGGAACCCGGGTTCTTGAA > NZ_CP009273/4534557‑4534717 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |