| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,351,156 | T→C | D71G (GAT→GGT) | sapA ← | peptide ABC transporter substrate‑binding protein SapA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,351,156 | 0 | T | C | 100.0% | 76.9 / NA | 22 | D71G (GAT→GGT) | sapA | peptide ABC transporter substrate‑binding protein SapA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (13/9); total (13/9) | |||||||||||
GGTGGAAGCGATAGGTCGCGCCGTTGTCGAGTACTTCCCAGCTTTCGGCAAGTTCCGGCATCAGGCGATAGGTATAGGGATCGACATCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAACCCACTGCTCGCTTTGGATGGGTTAAAGGTGTTGACTT > NZ_CP009273/1351070‑1351240 | ggTGGAAGCGATAGGTCGCGCCGTTGTCGAGTACTTCCCAGCTTTCGGCAAGTTCCGGCATCAGGCGATAGGTATAGGGATCGACACCca > 2:361234/1‑90 (MQ=255) gcgcCGTTGTCGAGTACTTCCCAGCTTTCGGCAAGTTCCGGCATCAGGCGATAGGTATAGGGATCGACACCCAGCAGTCGATCATAAAAc > 1:434046/1‑90 (MQ=255) gAGTACTTCCCAGCTTTCGGCAAGTTCCGGCATCAGGCGATAGGTATAGGGATCGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAg > 2:503555/1‑90 (MQ=255) tCCCAGCTTTCGGCAAGTTCCGGCATCAGGCGATAGGTATAGGGATCGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCg > 1:158394/1‑90 (MQ=255) cccAGCTTTCGGCAAGTTCCGGCATCAGGCGATAGGTATAGGGATCGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGa < 1:383421/90‑1 (MQ=255) ccAGCTTTCGGCAAGTTCCGGCATCAGGCGATAGGTATAGGGATCGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGAc > 2:224600/1‑90 (MQ=255) cAGGCGATAGGTATAGGGATCGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAACCCACTGCTc < 1:346565/82‑1 (MQ=255) cAGGCGATAGGTATAGGGATCGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAACCCACTGCTc > 2:346565/1‑82 (MQ=255) aGGCGATAGGTATAGGGATCGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAACCCACTGCTCGCTTTGGAt < 1:224600/90‑1 (MQ=255) aGGCGATAGGTATAGGGATCGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAACCCACTGCTCGCTTTGGAt < 2:243350/90‑1 (MQ=255) ggTATAGGGATCGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAACCCACTGCTCGCTTTGGATGGGTTaaa < 2:423274/90‑1 (MQ=255) ggTATAGGGATCGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAACCCACTGCTCGCTTTGGATGGGTTaaa < 1:503555/90‑1 (MQ=255) ataGGGATCGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAACCCACTGCTCGCTTTGGATGGGTTAAAGgt > 2:142782/1‑90 (MQ=255) aTCGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAAcc > 2:60176/1‑56 (MQ=255) aTCGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAAcc < 1:60176/56‑1 (MQ=255) tCGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAACCCACTGCTCGCTTTGGATGGGTTAAAGGTGTTGACt > 2:150070/1‑90 (MQ=255) cGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAACCCACTGCTCGCTTTGGAt < 2:241242/71‑1 (MQ=255) cGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAACCCACTGCTCGCTTTGGAt > 2:330911/1‑71 (MQ=255) cGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAACCCACTGCTCGCTTTGGAt < 1:330911/71‑1 (MQ=255) cGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAACCCACTGCTCGCTTTGGAt > 1:241242/1‑71 (MQ=255) cGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAACCCACTGCTCGCTTTGGATGGGTTAAAGGTGTTGACtt > 2:36800/1‑90 (MQ=255) cGACACCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAACCCACTGCTCGCTTTGGATGGGTTAAAGGTGTTGACtt > 1:306390/1‑90 (MQ=255) | GGTGGAAGCGATAGGTCGCGCCGTTGTCGAGTACTTCCCAGCTTTCGGCAAGTTCCGGCATCAGGCGATAGGTATAGGGATCGACATCCAGCAGTCGATCATAAAACTGGGCGGCAAGGGTATCGACAATTAACCCACTGCTCGCTTTGGATGGGTTAAAGGTGTTGACTT > NZ_CP009273/1351070‑1351240 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |