| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,472,006 | A→G | G43G (GGA→GGG) | ynbA → | CDP‑alcohol phosphatidyltransferase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,472,006 | 0 | A | G | 92.9% | 39.9 / ‑4.7 | 14 | G43G (GGA→GGG) | ynbA | CDP‑alcohol phosphatidyltransferase family protein |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (7/6); total (8/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGATTGCTGTTGATGTTGGCGGCACAACCCATCCTCTTTTTGCTATTGCCCATCGTGCTTTTTATCCGTATGGCGCTCAATGCGCT > NZ_CP009273/1471921‑1472089 | ggCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGGTTGc > 1:133792/1‑90 (MQ=255) cgacgaTGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGGTTGCTGt > 2:107794/1‑90 (MQ=255) cgacgaTGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGGTTGCTGt > 2:346948/1‑90 (MQ=255) acgaTGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGGTTGCTGTTg > 2:130876/1‑90 (MQ=255) ttttGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGGTTGCTGTTGATGTTg < 2:457191/90‑1 (MQ=255) ttttGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGGTTGCTGTTGATGTTg < 2:459791/90‑1 (MQ=255) caccacGTTACAGCGAATCACATCACTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGGTTGCTGTTGATGTTGGCGGCACAACCCATc < 1:43275/90‑1 (MQ=255) gCGAATCACATCACTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGGTTGCTGTTGATGTTGGCGGCACAACCCATCCTCTTTTTGCtt > 1:373635/1‑89 (MQ=255) gCGAATCACATCACTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGATTGCTGTTGATGTTGGCGGCACAACCCATCCTCTTTTTGCTa > 1:491922/1‑90 (MQ=255) cacTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGGTTGCTGTTGATGTTGGCGGCACAACCCATCCTCTTTTTGCTATTGCCCATCGt < 1:106486/90‑1 (MQ=255) gctgcACTGGCGCTTTCTCTTCTTACCGGGTTGCTGTTGATGTTGGCGGCACAACCCATCCTCTTTTTGCTATTGCCCATCGTGCttttt < 1:392098/90‑1 (MQ=255) tttCTCTTCTTACCGGGTTGCTGTTGATGTTGGCGGCACAACCCATCCTCTTTTTGCTATTGCCCATCGTGCTTTTTATCCGTATGgcgc > 2:87961/1‑90 (MQ=255) ttACCGGGTTGCTGTTGATGTTGGCGGCACAACCCATCCTCTTTTTGCTATTGCCCATCGTGCTTTTTATCCGTATGGCGCTCAATgcgc < 2:440579/90‑1 (MQ=255) tACCGGGTTGCTGTTGATGTTGGCGGCACAACCCATCCTCTTTTTGCTATTGCCCATCGTGCTTTTTATCCGTATGGCGCTCAATGCGCt > 2:415111/1‑90 (MQ=255) | GGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGATTGCTGTTGATGTTGGCGGCACAACCCATCCTCTTTTTGCTATTGCCCATCGTGCTTTTTATCCGTATGGCGCTCAATGCGCT > NZ_CP009273/1471921‑1472089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |